Variant report

Variant	rs7813602
Chromosome Location	chr8:104938695-104938696
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs34814451	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56059248	1.00[AMR][1000 genomes]
rs56384007	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73699008	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73699020	1.00[AMR][1000 genomes]
rs73699039	1.00[AMR][1000 genomes]
rs73699044	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73699050	1.00[AMR][1000 genomes]
rs7813608	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7828672	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7837018	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752692	chr8:104520824-105123824	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1031195	chr8:104601231-105194208	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
3	nsv831415	chr8:104907757-105115320	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:104929400-104949600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr8:104930000-104949400	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr8:104933600-104943800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr8:104937800-104939200	Enhancers	Brain Hippocampus Middle	brain
5	chr8:104938000-104949800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr8:104938400-104938800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr8:104938400-104939000	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr8:104938400-104939000	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr8:104938400-104939000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr8:104938400-104939400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr8:104938400-104939400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr8:104938600-104939000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr8:104938600-104939000	Enhancers	Brain Anterior Caudate	brain
14	chr8:104938600-104939000	Enhancers	Brain Substantia Nigra	brain
15	chr8:104938600-104939400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr8:104938600-104939400	Enhancers	Adipose Nuclei	Adipose
17	chr8:104938600-104939400	Enhancers	Pancreatic Islets	Pancreatic Islet

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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