Variant report

Variant	rs7813759
Chromosome Location	chr8:96044414-96044415
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:96042773..96045129-chr8:96053091..96055278,3	K562	blood:
2	chr8:96041290..96045030-chr8:96046427..96048931,4	MCF-7	breast:
3	chr8:96044407..96045968-chr8:96052292..96053979,2	MCF-7	breast:
4	chr8:96041538..96045239-chr8:96047596..96052623,5	K562	blood:
5	chr8:96035744..96039512-chr8:96039788..96046844,8	K562	blood:

Variant related genes	Relation type
ENSG00000156170	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs57065540	0.83[AMR][1000 genomes]
rs57068400	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58963249	1.00[AMR][1000 genomes]
rs59319685	1.00[AMR][1000 genomes]
rs60541843	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61166437	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61287848	1.00[AMR][1000 genomes]
rs61442579	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61454116	1.00[AMR][1000 genomes]
rs6471507	1.00[AMR][1000 genomes]
rs6471508	1.00[AMR][1000 genomes]
rs6987951	0.83[AMR][1000 genomes]
rs7003431	0.87[YRI][hapmap];1.00[AMR][1000 genomes]
rs7824488	0.87[YRI][hapmap];1.00[AMR][1000 genomes]
rs7832411	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017301	chr8:95273503-96248352	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv539680	chr8:95273503-96248352	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv508520	chr8:95939373-96140068	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:96037800-96070200	Weak transcription	Aorta	Aorta
2	chr8:96038000-96063800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr8:96038200-96045000	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr8:96038200-96045400	Weak transcription	Ovary	ovary
5	chr8:96038200-96046000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr8:96038200-96050200	Weak transcription	Spleen	Spleen
7	chr8:96038200-96054400	Weak transcription	Fetal Kidney	kidney
8	chr8:96038200-96058800	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr8:96038200-96059200	Weak transcription	Right Ventricle	heart
10	chr8:96038200-96061000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr8:96038200-96061200	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr8:96038200-96061200	Weak transcription	Psoas Muscle	Psoas
13	chr8:96038200-96072400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr8:96038200-96080000	Weak transcription	Colonic Mucosa	Colon
15	chr8:96038400-96044600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr8:96038400-96044600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr8:96038400-96044600	Weak transcription	Adipose Nuclei	Adipose
18	chr8:96038400-96044600	Weak transcription	Duodenum Mucosa	Duodenum
19	chr8:96038400-96044800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr8:96038400-96044800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr8:96038400-96044800	Weak transcription	Brain Anterior Caudate	brain
22	chr8:96038400-96044800	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr8:96038400-96044800	Weak transcription	Placenta	Placenta
24	chr8:96038400-96044800	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr8:96038400-96045400	Weak transcription	Brain Germinal Matrix	brain
26	chr8:96038400-96045600	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr8:96038400-96045600	Weak transcription	NHEK	skin
28	chr8:96038400-96045800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr8:96038400-96046000	Weak transcription	Rectal Smooth Muscle	rectum
30	chr8:96038400-96048600	Weak transcription	Osteobl	bone
31	chr8:96038400-96054000	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr8:96038400-96054000	Weak transcription	HUVEC	blood vessel
33	chr8:96038400-96054200	Weak transcription	Fetal Heart	heart
34	chr8:96038400-96054200	Weak transcription	NH-A	brain
35	chr8:96038400-96054200	Weak transcription	NHDF-Ad	bronchial
36	chr8:96038400-96054400	Weak transcription	Colon Smooth Muscle	Colon
37	chr8:96038400-96055000	Weak transcription	HSMMtube	muscle
38	chr8:96038400-96060600	Weak transcription	NHLF	lung
39	chr8:96038400-96061000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
40	chr8:96038400-96063600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
41	chr8:96038400-96066800	Weak transcription	Stomach Mucosa	stomach
42	chr8:96038400-96085200	Weak transcription	Pancreatic Islets	Pancreatic Islet
43	chr8:96038600-96044800	Weak transcription	HUES6 Cell Line	embryonic stem cell
44	chr8:96038600-96044800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr8:96038600-96044800	Weak transcription	Primary T cells from cord blood	blood
46	chr8:96038600-96044800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
47	chr8:96038600-96044800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr8:96038600-96044800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr8:96038600-96044800	Weak transcription	Fetal Muscle Leg	muscle
50	chr8:96038600-96045000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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