Variant report

Variant	rs7814369
Chromosome Location	chr8:60411862-60411863
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10089372	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13439181	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs28433474	1.00[AMR][1000 genomes]
rs28508332	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28783447	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28850624	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029441	chr8:60099776-60539141	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv539629	chr8:60099776-60539141	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv831330	chr8:60270398-60514078	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:60411000-60412000	ZNF genes & repeats	Fetal Intestine Small	intestine
2	chr8:60411000-60412800	Enhancers	Colon Smooth Muscle	Colon
3	chr8:60411000-60413000	Enhancers	Rectal Smooth Muscle	rectum
4	chr8:60411200-60412000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr8:60411600-60412600	Enhancers	Fetal Intestine Large	intestine
6	chr8:60411600-60412600	Enhancers	HMEC	breast
7	chr8:60411800-60412200	Enhancers	Gastric	stomach
8	chr8:60411800-60412400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr8:60411800-60412400	Enhancers	Pancreatic Islets	Pancreatic Islet
10	chr8:60411800-60412600	Enhancers	Adipose Nuclei	Adipose
11	chr8:60411800-60412600	Enhancers	Stomach Mucosa	stomach
12	chr8:60411800-60413000	Enhancers	Pancreas	Pancrea
13	chr8:60411800-60413200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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