Variant report

Variant	rs7814950
Chromosome Location	chr8:69350951-69350952
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr8:69350927-69350977	CMK	blood:	n/a
2	chr8:69350927-69350977	U87	brain:	n/a
3	chr8:69350927-69350977	AG10803	skin:	n/a
4	chr8:69350927-69350977	NB4	blood:	n/a
5	chr8:69350927-69350977	ProgFib	skin:	n/a
6	chr8:69350927-69350977	AG09309	skin:	n/a
7	chr8:69350927-69350977	NH-A	brain:	n/a
8	chr8:69350927-69350977	HL-60	blood:	n/a
9	chr8:69350927-69350977	LNCaP	prostate:	n/a
10	chr8:69350927-69350977	GM12891	blood:	n/a
11	chr8:69350927-69350977	HCPEpiC	choroid plexus:	n/a
12	chr8:69350927-69350977	MCF-7	breast:	n/a
13	chr8:69350927-69350977	AG04450	lung:	fetal
14	chr8:69350927-69350977	HRE	kidney:	n/a
15	chr8:69350927-69350977	Hela-S3	cervix:	n/a
16	chr8:69350927-69350977	Hepatocyte	liver:	n/a
17	chr8:69350927-69350977	HMEC	breast:	n/a
18	chr8:69350927-69350977	HEK293	kidney:	embryo
19	chr8:69350927-69350977	HRCEpiC	kidney:	n/a
20	chr8:69350927-69350977	RPTEC	kidney:	n/a
21	chr8:69350927-69350977	AG04449	skin:	fetal
22	chr8:69350927-69350977	PANC-1	pancreas:	n/a
23	chr8:69350927-69350977	HAEpiC	amniotic membrane:	n/a
24	chr8:69350927-69350977	SAEC	small airway:	n/a
25	chr8:69350927-69350977	HIPEpiC	eye:	n/a
26	chr8:69350927-69350977	IMR90	lung:	fetal
27	chr8:69350927-69350977	HepG2	liver:	n/a
28	chr8:69350927-69350977	BJ	skin:	n/a
29	chr8:69350927-69350977	NHBE	bronchial:	n/a
30	chr8:69350927-69350977	AG09319	gingival:	n/a
31	chr8:69350927-69350977	HUVEC	blood vessel:	n/a
32	chr8:69350927-69350977	SK-N-SH_RA	brain:	n/a
33	chr8:69350927-69350977	HNPCEpiC	eye:	n/a
34	chr8:69350927-69350977	A549	lung:	n/a
35	chr8:69350927-69350977	ECC-1	luminal epithelium:	n/a
36	chr8:69350927-69350977	GM19239	blood:	n/a
37	chr8:69350927-69350977	HCT-116	colon:	n/a
38	chr8:69350927-69350977	Jurkat	blood:	n/a
39	chr8:69350927-69350977	PrEC	prostate:	n/a
40	chr8:69350927-69350977	K562	blood:	n/a
41	chr8:69350927-69350977	MCF10A-Er-Src	breast:	n/a
42	chr8:69350927-69350977	GM06990	blood:	n/a
43	chr8:69350927-69350977	SK-N-MC	brain:	n/a
44	chr8:69350927-69350977	HEEpiC	esophagus:	n/a
45	chr8:69350927-69350977	ovcar-3	ovarian:	n/a
46	chr8:69350927-69350977	GM12892	blood:	n/a
47	chr8:69350927-69350977	SK-N-SH	brain:	n/a
48	chr8:69350927-69350977	HRPEpiC	eye:	n/a
49	chr8:69350927-69350977	GM12878	blood:	n/a
50	chr8:69350927-69350977	HCF	heart:	n/a

No data

Variant related genes	Relation type
C8orf34	CpG island

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs16934606	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16934610	1.00[CEU][hapmap];0.88[YRI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6993474	0.93[EUR][1000 genomes]
rs72664904	0.97[EUR][1000 genomes]
rs72664915	0.93[EUR][1000 genomes]
rs72664917	0.93[EUR][1000 genomes]
rs73260788	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73260794	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948687	chr8:69041121-69642540	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1023810	chr8:69308665-69440129	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv539644	chr8:69308665-69440129	Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69342800-69364800	Weak transcription	Aorta	Aorta
2	chr8:69346000-69360000	Weak transcription	Adipose Nuclei	Adipose
3	chr8:69350800-69354000	Weak transcription	Brain Anterior Caudate	brain

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