Variant report

Variant	rs78151238
Chromosome Location	chr1:151694626-151694627
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:151693523..151696845-chr1:151699758..151701957,3	MCF-7	breast:
2	chr1:151430404..151432335-chr1:151692913..151695013,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AL589765.1-1	chr1:151694605-151694638	NONHSAT006412

Variant related genes	Relation type
ENSG00000143442	Chromatin interaction
ENSG00000178796	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3437612	chr1:151693528-151694776	Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:151693200-151694800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr1:151693800-151695000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
3	chr1:151694000-151694800	Bivalent Enhancer	Dnd41	blood
4	chr1:151694000-151695000	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
5	chr1:151694200-151694800	Flanking Active TSS	Brain Anterior Caudate	brain
6	chr1:151694200-151694800	Bivalent Enhancer	Fetal Kidney	kidney
7	chr1:151694400-151694800	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr1:151694400-151694800	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
9	chr1:151694400-151694800	Bivalent Enhancer	Primary B cells from peripheral blood	blood
10	chr1:151694400-151694800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
11	chr1:151694400-151694800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr1:151694400-151694800	Bivalent Enhancer	Primary T regulatory cells fromperipheralblood	blood
13	chr1:151694400-151694800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
14	chr1:151694400-151694800	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
15	chr1:151694400-151694800	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
16	chr1:151694400-151694800	Bivalent Enhancer	Primary mononuclear cells fromperipheralblood	Blood
17	chr1:151694400-151694800	Bivalent Enhancer	Fetal Muscle Leg	muscle
18	chr1:151694400-151694800	Enhancers	Placenta	Placenta
19	chr1:151694400-151694800	Bivalent Enhancer	Fetal Stomach	stomach
20	chr1:151694400-151694800	Enhancers	Rectal Mucosa Donor 31	rectum
21	chr1:151694400-151695000	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
22	chr1:151694400-151695000	Enhancers	Brain Substantia Nigra	brain
23	chr1:151694400-151695600	Bivalent Enhancer	Fetal Brain Male	brain
24	chr1:151694400-151697200	Weak transcription	A549	lung
25	chr1:151694600-151694800	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr1:151694600-151694800	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
27	chr1:151694600-151694800	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
28	chr1:151694600-151694800	Bivalent Enhancer	Primary B cells from cord blood	blood
29	chr1:151694600-151694800	Bivalent Enhancer	Primary T cells from cord blood	blood
30	chr1:151694600-151694800	Bivalent Enhancer	Primary hematopoietic stem cells	blood
31	chr1:151694600-151694800	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
32	chr1:151694600-151694800	Enhancers	Primary T helper cells fromperipheralblood	blood
33	chr1:151694600-151694800	Bivalent Enhancer	Primary T killer memory cells from peripheral blood	blood
34	chr1:151694600-151694800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr1:151694600-151694800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr1:151694600-151694800	Enhancers	Liver	Liver
37	chr1:151694600-151694800	Enhancers	Fetal Intestine Large	intestine
38	chr1:151694600-151694800	Enhancers	Rectal Mucosa Donor 29	rectum
39	chr1:151694600-151694800	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
40	chr1:151694600-151694800	Bivalent Enhancer	NHLF	lung
41	chr1:151694600-151695000	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr1:151694600-151695000	Bivalent Enhancer	Primary T helper naive cells from peripheral blood	blood
43	chr1:151694600-151695000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
44	chr1:151694600-151695000	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
45	chr1:151694600-151695000	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
46	chr1:151694600-151695000	Enhancers	Brain Cingulate Gyrus	brain
47	chr1:151694600-151695000	Enhancers	Brain Hippocampus Middle	brain
48	chr1:151694600-151695000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
49	chr1:151694600-151695000	Enhancers	Skeletal Muscle Female	skeletal muscle
50	chr1:151694600-151695200	Enhancers	Brain Inferior Temporal Lobe	brain

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