Variant report

Variant	rs7815178
Chromosome Location	chr8:106809736-106809737
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:106808869..106810668-chr8:106812697..106814758,2	MCF-7	breast:
2	chr8:106807823..106810628-chr8:106812479..106815151,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1596163	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs1596164	0.80[AFR][1000 genomes]
rs16873702	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73306871	0.80[AFR][1000 genomes]
rs7816259	0.83[YRI][hapmap]
rs7816597	0.83[YRI][hapmap]
rs7821554	0.82[YRI][hapmap]
rs7822065	0.83[YRI][hapmap]
rs7834726	0.82[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv831418	chr8:106648456-106833333	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:106783200-106813200	Weak transcription	Psoas Muscle	Psoas
2	chr8:106783200-106813200	Weak transcription	Right Ventricle	heart
3	chr8:106791800-106813800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr8:106792200-106813200	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr8:106796600-106823600	Weak transcription	HUVEC	blood vessel
6	chr8:106798000-106810800	Weak transcription	Left Ventricle	heart
7	chr8:106800200-106814000	Weak transcription	Fetal Heart	heart
8	chr8:106801200-106812600	Weak transcription	Esophagus	oesophagus
9	chr8:106801200-106813400	Weak transcription	Fetal Stomach	stomach
10	chr8:106805000-106817200	Weak transcription	Fetal Brain Male	brain
11	chr8:106807600-106813000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr8:106807600-106813000	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr8:106807600-106813400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr8:106807600-106813400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr8:106807600-106814000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr8:106807800-106813200	Weak transcription	Spleen	Spleen
17	chr8:106807800-106813600	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr8:106808000-106814400	Weak transcription	Brain Angular Gyrus	brain
19	chr8:106808200-106813400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr8:106808600-106810400	Weak transcription	Fetal Thymus	thymus
21	chr8:106808600-106816000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr8:106808800-106811200	Strong transcription	Fetal Muscle Trunk	muscle
23	chr8:106808800-106815400	Strong transcription	Stomach Smooth Muscle	stomach
24	chr8:106809000-106809800	Strong transcription	NH-A	brain
25	chr8:106809000-106810200	Strong transcription	K562	blood
26	chr8:106809000-106810400	Strong transcription	Fetal Lung	lung
27	chr8:106809000-106811200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr8:106809000-106811200	Strong transcription	Aorta	Aorta
29	chr8:106809000-106811200	Strong transcription	Fetal Muscle Leg	muscle
30	chr8:106809000-106815600	Strong transcription	Adipose Nuclei	Adipose
31	chr8:106809000-106815800	Strong transcription	Ovary	ovary
32	chr8:106809200-106810800	Weak transcription	Thymus	Thymus
33	chr8:106809400-106810000	Strong transcription	Duodenum Smooth Muscle	Duodenum
34	chr8:106809400-106813200	Weak transcription	Brain Anterior Caudate	brain
35	chr8:106809400-106813200	Weak transcription	Colon Smooth Muscle	Colon
36	chr8:106809400-106813200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr8:106809400-106813200	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr8:106809600-106813200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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