Variant report

Variant	rs7816388
Chromosome Location	chr8:103641668-103641669
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs2436966	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2511662	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33118	chr8:103358567-104068172	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv1028329	chr8:103574775-103684362	Strong transcription Bivalent/Poised TSS Enhancers Active TSS Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103622800-103646400	Weak transcription	Psoas Muscle	Psoas
2	chr8:103635000-103646600	Weak transcription	Right Atrium	heart
3	chr8:103637200-103642400	Enhancers	Placenta	Placenta
4	chr8:103640000-103646600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr8:103640200-103645200	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr8:103640400-103642200	Enhancers	Skeletal Muscle Male	skeletal muscle
7	chr8:103640400-103642400	Enhancers	Fetal Heart	heart
8	chr8:103640600-103644600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr8:103640600-103646400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr8:103640800-103642000	Weak transcription	Right Ventricle	heart
11	chr8:103640800-103646600	Weak transcription	Fetal Stomach	stomach
12	chr8:103641200-103642000	Weak transcription	Left Ventricle	heart
13	chr8:103641200-103642200	Enhancers	Liver	Liver
14	chr8:103641200-103644400	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr8:103641200-103644600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links