Variant report

Variant	rs7816442
Chromosome Location	chr8:107391890-107391891
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10087368	0.80[ASN][1000 genomes]
rs10087599	0.80[ASN][1000 genomes]
rs10087808	0.80[ASN][1000 genomes]
rs10108813	0.82[ASN][1000 genomes]
rs11986170	0.81[ASN][1000 genomes]
rs11993269	0.81[ASN][1000 genomes]
rs12674760	0.80[ASN][1000 genomes]
rs12678851	0.80[ASN][1000 genomes]
rs12678853	0.80[ASN][1000 genomes]
rs12678878	0.80[ASN][1000 genomes]
rs1954753	0.82[ASN][1000 genomes]
rs1954754	0.82[ASN][1000 genomes]
rs2022973	0.80[ASN][1000 genomes]
rs2022974	0.80[ASN][1000 genomes]
rs2022979	0.86[ASN][1000 genomes]
rs4587301	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533134	chr8:107307812-107670002	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv824701	chr8:107378298-107520063	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107362400-107427000	Weak transcription	Aorta	Aorta
2	chr8:107362800-107397000	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr8:107374400-107409800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr8:107381200-107403400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr8:107384400-107396600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr8:107384600-107404000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr8:107390800-107396600	Weak transcription	Gastric	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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