Variant report

Variant	rs7816656
Chromosome Location	chr8:57981829-57981830
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1442126	1.00[EUR][1000 genomes]
rs16921558	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16921583	1.00[EUR][1000 genomes]
rs2028534	1.00[EUR][1000 genomes]
rs61298315	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6980616	1.00[EUR][1000 genomes]
rs6982206	1.00[EUR][1000 genomes]
rs7002434	1.00[EUR][1000 genomes]
rs7003838	1.00[EUR][1000 genomes]
rs73681827	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73681828	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73681862	1.00[EUR][1000 genomes]
rs73681880	1.00[EUR][1000 genomes]
rs7812477	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7817960	1.00[EUR][1000 genomes]
rs7820719	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7835525	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029443	chr8:57748114-58057656	Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	esv3430321	chr8:57858417-58055129	Strong transcription Genic enhancers Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1027125	chr8:57891279-58095884	Weak transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv2758161	chr8:57930392-58474449	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	esv2759618	chr8:57930392-58474449	Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	nsv508510	chr8:57967028-57994116	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:57978800-57982400	Enhancers	Stomach Mucosa	stomach
2	chr8:57981200-57982400	Enhancers	HUVEC	blood vessel
3	chr8:57981600-57982000	Weak transcription	Adipose Nuclei	Adipose
4	chr8:57981600-57988600	Weak transcription	Pancreas	Pancrea
5	chr8:57981800-57982000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links