Variant report

Variant	rs7817048
Chromosome Location	chr8:62826149-62826150
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr8:62826062-62826429	MCF-7	breast:	n/a	chr8:62826210-62826221 chr8:62826141-62826153 chr8:62826253-62826264
2	GATA3	chr8:62825974-62826446	MCF-7	breast:	n/a	chr8:62826194-62826204
3	TBP	chr8:62826021-62826337	Hela-S3	cervix:	n/a	n/a
4	RFX5	chr8:62825998-62826420	Hela-S3	cervix:	n/a	n/a
5	USF2	chr8:62825754-62826462	Hela-S3	cervix:	n/a	n/a
6	CEBPB	chr8:62826081-62826354	H1-hESC	embryonic stem cell:	n/a	chr8:62826210-62826221 chr8:62826141-62826153 chr8:62826253-62826264
7	CEBPB	chr8:62825950-62826476	Hela-S3	cervix:	n/a	chr8:62826210-62826221 chr8:62826141-62826153 chr8:62826253-62826264
8	MAX	chr8:62825894-62826380	Hela-S3	cervix:	n/a	chr8:62826213-62826222
9	CEBPB	chr8:62826103-62826449	A549	lung:	n/a	chr8:62826210-62826221 chr8:62826141-62826153 chr8:62826253-62826264
10	CEBPB	chr8:62826048-62826471	MCF-7	breast:	n/a	chr8:62826210-62826221 chr8:62826141-62826153 chr8:62826253-62826264
11	GATA2	chr8:62826063-62826398	SH-SY5Y	brain:	n/a	chr8:62826194-62826204
12	RCOR1	chr8:62826080-62826391	K562	blood:	n/a	n/a
13	ATF3	chr8:62826043-62826345	K562	blood:	n/a	n/a
14	KAP1	chr8:62825861-62826420	U2OS	brain:	n/a	n/a
15	SMC3	chr8:62826018-62826477	Hela-S3	cervix:	n/a	n/a
16	ARID3A	chr8:62826142-62826284	HepG2	liver:	n/a	n/a
17	GTF2F1	chr8:62826050-62826466	Hela-S3	cervix:	n/a	n/a
18	JUND	chr8:62826084-62826336	K562	blood:	n/a	n/a
19	EP300	chr8:62825909-62826435	Hela-S3	cervix:	n/a	chr8:62826254-62826268
20	STAT3	chr8:62825967-62826375	Hela-S3	cervix:	n/a	n/a
21	BRCA1	chr8:62826026-62826395	Hela-S3	cervix:	n/a	n/a
22	JUND	chr8:62825986-62826566	Hela-S3	cervix:	n/a	n/a
23	CEBPB	chr8:62826006-62826427	K562	blood:	n/a	chr8:62826210-62826221 chr8:62826141-62826153 chr8:62826253-62826264
24	CHD2	chr8:62826022-62826380	Hela-S3	cervix:	n/a	n/a
25	CEBPB	chr8:62826118-62826406	HepG2	liver:	n/a	chr8:62826210-62826221 chr8:62826141-62826153 chr8:62826253-62826264
26	CEBPB	chr8:62826062-62826435	HepG2	liver:	n/a	chr8:62826210-62826221 chr8:62826141-62826153 chr8:62826253-62826264
27	CEBPB	chr8:62826040-62826449	HepG2	liver:	n/a	chr8:62826210-62826221 chr8:62826141-62826153 chr8:62826253-62826264
28	ELK1	chr8:62826104-62826382	Hela-S3	cervix:	n/a	n/a
29	CEBPB	chr8:62826117-62826311	HepG2	liver:	n/a	chr8:62826210-62826221 chr8:62826141-62826153 chr8:62826253-62826264
30	CEBPB	chr8:62826082-62826392	A549	lung:	n/a	chr8:62826210-62826221 chr8:62826141-62826153 chr8:62826253-62826264
31	CEBPB	chr8:62826058-62826434	K562	blood:	n/a	chr8:62826210-62826221 chr8:62826141-62826153 chr8:62826253-62826264
32	RCOR1	chr8:62826015-62826408	Hela-S3	cervix:	n/a	n/a
33	RAD21	chr8:62825922-62826437	Hela-S3	cervix:	n/a	n/a
34	CEBPB	chr8:62826079-62826426	K562	blood:	n/a	chr8:62826210-62826221 chr8:62826141-62826153 chr8:62826253-62826264
35	TCF7L2	chr8:62825930-62826481	Hela-S3	cervix:	n/a	n/a

Variant related genes	Relation type
ENSG00000253544	TF binding region

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs975847	0.87[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024432	chr8:62086247-62898782	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv932198	chr8:62336705-62914562	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	esv2761430	chr8:62517980-62873803	Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv1015216	chr8:62517980-62873803	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	nsv611427	chr8:62733267-62848952	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv831338	chr8:62736394-62913048	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv1032414	chr8:62789246-62861376	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv982136	chr8:62816124-62828493	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:62823800-62826200	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr8:62824000-62826200	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr8:62824000-62826400	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr8:62824000-62826600	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr8:62824800-62826600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr8:62825200-62827200	Enhancers	Hela-S3	cervix
7	chr8:62825400-62826200	Enhancers	H9 Cell Line	embryonic stem cell
8	chr8:62825400-62826200	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr8:62825400-62826400	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr8:62825600-62826600	Enhancers	H1 Cell Line	embryonic stem cell
11	chr8:62825800-62826400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr8:62826000-62826200	Enhancers	iPS-20b Cell Line	embryonic stem cell

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