Variant report

Variant	rs7817089
Chromosome Location	chr8:6423932-6423933
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:5)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:5 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr8:6423765-6424947	MCF-7	breast:	n/a	n/a
2	MYC	chr8:6423811-6423952	MCF-7	breast:	n/a	chr8:6423843-6423850
3	POLR2A	chr8:6423804-6424956	MCF-7	breast:	n/a	n/a
4	MYC	chr8:6423814-6424927	MCF-7	breast:	n/a	chr8:6423843-6423850
5	NR2C2	chr8:6423914-6424901	GM12878	blood:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr8:6423908-6423958	AG04450	lung:	fetal
2	chr8:6423908-6423958	LNCaP	prostate:	n/a
3	chr8:6423908-6423958	SAEC	small airway:	n/a
4	chr8:6423908-6423958	HL-60	blood:	n/a
5	chr8:6423908-6423958	HMEC	breast:	n/a
6	chr8:6423908-6423958	HEK293	kidney:	embryo
7	chr8:6423908-6423958	RPTEC	kidney:	n/a
8	chr8:6423908-6423958	AoSMC	blood vessel:	n/a
9	chr8:6423908-6423958	HEEpiC	esophagus:	n/a
10	chr8:6423908-6423958	NT2-D1	testis:	n/a
11	chr8:6423908-6423958	HRPEpiC	eye:	n/a
12	chr8:6423908-6423958	Hela-S3	cervix:	n/a
13	chr8:6423908-6423958	SKMC	muscle:	n/a
14	chr8:6423908-6423958	GM06990	blood:	n/a
15	chr8:6423908-6423958	GM12892	blood:	n/a
16	chr8:6423908-6423958	HCT-116	colon:	n/a
17	chr8:6423908-6423958	SK-N-SH_RA	brain:	n/a
18	chr8:6423908-6423958	HNPCEpiC	eye:	n/a
19	chr8:6423908-6423958	AG10803	skin:	n/a
20	chr8:6423908-6423958	Hepatocyte	liver:	n/a
21	chr8:6423908-6423958	IMR90	lung:	fetal
22	chr8:6423908-6423958	PFSK-1	brain:	n/a
23	chr8:6423908-6423958	MCF-7	breast:	n/a
24	chr8:6423908-6423958	ECC-1	luminal epithelium:	n/a
25	chr8:6423908-6423958	T-47D	breast:	n/a
26	chr8:6423908-6423958	SK-N-SH	brain:	n/a
27	chr8:6423908-6423958	PANC-1	pancreas:	n/a
28	chr8:6423908-6423958	AG09319	gingival:	n/a
29	chr8:6423908-6423958	AG09309	skin:	n/a
30	chr8:6423908-6423958	H1-hESC	embryonic stem cell:	embryo
31	chr8:6423908-6423958	A549	lung:	n/a
32	chr8:6423908-6423958	HCM	heart:	n/a
33	chr8:6423908-6423958	HRCEpiC	kidney:	n/a
34	chr8:6423908-6423958	K562	blood:	n/a
35	chr8:6423908-6423958	AG04449	skin:	fetal
36	chr8:6423908-6423958	NHDF-neo	bronchial:	n/a
37	chr8:6423908-6423958	MCF10A-Er-Src	breast:	n/a
38	chr8:6423908-6423958	HIPEpiC	eye:	n/a
39	chr8:6423908-6423958	HPAEpiC	pulmonary alveolar:	n/a
40	chr8:6423908-6423958	Jurkat	blood:	n/a
41	chr8:6423908-6423958	PrEC	prostate:	n/a
42	chr8:6423908-6423958	SK-N-MC	brain:	n/a
43	chr8:6423908-6423958	GM19239	blood:	n/a
44	chr8:6423908-6423958	ProgFib	skin:	n/a
45	chr8:6423908-6423958	NHBE	bronchial:	n/a
46	chr8:6423908-6423958	HCF	heart:	n/a
47	chr8:6423908-6423958	CMK	blood:	n/a
48	chr8:6423908-6423958	HUVEC	blood vessel:	n/a
49	chr8:6423908-6423958	BE2_C	brain:	n/a
50	chr8:6423908-6423958	HRE	kidney:	n/a

No data

Variant related genes	Relation type
ANGPT2	TF binding region
ANGPT2	CpG island

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs2515500	1.00[AMR][1000 genomes]
rs2515515	1.00[AMR][1000 genomes]
rs2912061	1.00[AMR][1000 genomes]
rs3020248	1.00[YRI][hapmap]
rs7003563	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73516781	1.00[AMR][1000 genomes]
rs73516799	1.00[AMR][1000 genomes]
rs73518718	1.00[AMR][1000 genomes]
rs7814961	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890034	chr8:5926632-6427868	Enhancers Strong transcription Active TSS Genic enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1021175	chr8:5965453-6880364	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv1027682	chr8:6018123-6920312	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
4	esv3506199	chr8:6116693-6536592	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
5	esv3506200	chr8:6116693-6536592	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
6	nsv933282	chr8:6261036-6440592	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv1015981	chr8:6286575-6578450	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
8	nsv1027313	chr8:6286575-6920312	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
9	nsv890057	chr8:6317165-6427868	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv1021684	chr8:6350091-6809455	Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
11	esv2422383	chr8:6362389-6781593	Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
12	nsv610004	chr8:6402366-6772913	Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
13	nsv1029241	chr8:6411300-6761720	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
14	esv3421336	chr8:6421944-6427042	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
15	esv3364328	chr8:6423194-6425692	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:6364200-6478200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr8:6415200-6424000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr8:6416800-6442400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr8:6417600-6424000	Weak transcription	NHEK	skin
5	chr8:6417600-6442800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr8:6419000-6462400	Weak transcription	GM12878-XiMat	blood
7	chr8:6420000-6427400	Weak transcription	Thymus	Thymus
8	chr8:6420800-6424000	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr8:6420800-6424200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr8:6420800-6424400	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr8:6420800-6427600	Weak transcription	NHDF-Ad	bronchial
12	chr8:6420800-6429800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr8:6420800-6433200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr8:6421000-6424600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr8:6421000-6424800	Weak transcription	Fetal Thymus	thymus
16	chr8:6421000-6425200	Weak transcription	Fetal Muscle Leg	muscle
17	chr8:6421000-6425400	Weak transcription	Fetal Stomach	stomach
18	chr8:6421000-6425800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr8:6421000-6426000	Weak transcription	Stomach Smooth Muscle	stomach
20	chr8:6421000-6427400	Weak transcription	Left Ventricle	heart
21	chr8:6421000-6427400	Weak transcription	Ovary	ovary
22	chr8:6421000-6427800	Weak transcription	Aorta	Aorta
23	chr8:6421000-6427800	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr8:6421000-6435400	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr8:6421200-6424000	Weak transcription	Adipose Nuclei	Adipose
26	chr8:6421200-6424800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr8:6421200-6425200	Weak transcription	Primary hematopoietic stem cells	blood
28	chr8:6421200-6425600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr8:6421200-6436200	Weak transcription	Right Atrium	heart
30	chr8:6421400-6427400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr8:6421400-6433200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr8:6421600-6426800	Weak transcription	HUVEC	blood vessel
33	chr8:6421600-6462800	Weak transcription	Primary B cells from cord blood	blood
34	chr8:6421800-6424000	Weak transcription	Duodenum Mucosa	Duodenum
35	chr8:6421800-6427400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr8:6422000-6426800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr8:6422200-6424800	Weak transcription	Primary B cells from peripheral blood	blood
38	chr8:6423400-6424800	Strong transcription	Primary T cells from cord blood	blood
39	chr8:6423600-6424800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr8:6423800-6424000	Genic enhancers	Esophagus	oesophagus
41	chr8:6423800-6424000	Genic enhancers	Gastric	stomach
42	chr8:6423800-6424200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr8:6423800-6424400	ZNF genes & repeats	Lung	lung
44	chr8:6423800-6424600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr8:6423800-6424600	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr8:6423800-6424800	ZNF genes & repeats	Spleen	Spleen
47	chr8:6423800-6425000	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr8:6423800-6425000	ZNF genes & repeats	Pancreas	Pancrea
49	chr8:6423800-6425000	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
50	chr8:6423800-6425000	Genic enhancers	Dnd41	blood

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