Variant report

Variant	rs7817747
Chromosome Location	chr8:86151879-86151880
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1021457	1.00[ASN][1000 genomes]
rs1021458	1.00[ASN][1000 genomes]
rs11777530	1.00[ASN][1000 genomes]
rs11780942	1.00[ASN][1000 genomes]
rs1472200	1.00[ASN][1000 genomes]
rs1493301	1.00[ASN][1000 genomes]
rs17741410	0.90[GIH][hapmap];1.00[ASN][1000 genomes]
rs17814075	1.00[ASN][1000 genomes]
rs17814183	1.00[ASN][1000 genomes]
rs17814255	0.90[GIH][hapmap];1.00[ASN][1000 genomes]
rs17814594	0.86[GIH][hapmap];1.00[ASN][1000 genomes]
rs2466764	1.00[ASN][1000 genomes]
rs2645050	1.00[ASN][1000 genomes]
rs2725295	1.00[ASN][1000 genomes]
rs4150926	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62512497	1.00[ASN][1000 genomes]
rs62512498	1.00[ASN][1000 genomes]
rs62525422	0.80[EUR][1000 genomes]
rs62525428	0.82[EUR][1000 genomes]
rs62525429	0.82[EUR][1000 genomes]
rs62527221	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62527224	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6605618	1.00[ASN][1000 genomes]
rs6984702	1.00[ASN][1000 genomes]
rs6990339	1.00[ASN][1000 genomes]
rs6994366	1.00[ASN][1000 genomes]
rs981495	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv971329	chr8:86094967-86183119	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1018483	chr8:86142258-86547831	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7817747	LRRCC1	cis	Artery Tibial	GTEx
rs7817747	LRRCC1	cis	parietal	SCAN

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:86133800-86157200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:86134600-86157200	Weak transcription	Right Atrium	heart
3	chr8:86135200-86155200	Weak transcription	Primary B cells from cord blood	blood
4	chr8:86136000-86157200	Weak transcription	Liver	Liver
5	chr8:86136200-86157000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr8:86136400-86157000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr8:86139600-86157200	Weak transcription	Pancreas	Pancrea
8	chr8:86142600-86157200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr8:86143600-86157000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr8:86145000-86157200	Weak transcription	Ovary	ovary
11	chr8:86145600-86157400	Weak transcription	Brain Angular Gyrus	brain
12	chr8:86146200-86152600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr8:86146200-86156400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr8:86146200-86157200	Weak transcription	Gastric	stomach
15	chr8:86146400-86152400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr8:86148000-86157200	Weak transcription	Esophagus	oesophagus
17	chr8:86148200-86157200	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr8:86149200-86157000	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr8:86151200-86153000	Enhancers	Duodenum Mucosa	Duodenum
20	chr8:86151200-86153200	Enhancers	Fetal Intestine Large	intestine
21	chr8:86151400-86152400	Enhancers	Rectal Mucosa Donor 31	rectum
22	chr8:86151400-86152400	Enhancers	HepG2	liver
23	chr8:86151400-86152600	Enhancers	Fetal Intestine Small	intestine
24	chr8:86151600-86152000	Enhancers	Sigmoid Colon	Sigmoid Colon
25	chr8:86151800-86152200	Enhancers	Small Intestine	intestine
26	chr8:86151800-86152600	Enhancers	Stomach Mucosa	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links