Variant report
| Variant | rs7818318 |
|---|---|
| Chromosome Location | chr8:92391870-92391871 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs10088043 | 1.00[JPT][hapmap] |
| rs10102488 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap] |
| rs10102673 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap] |
| rs10109254 | 1.00[CHD][hapmap];1.00[JPT][hapmap] |
| rs10808635 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs13248522 | 1.00[CHD][hapmap];1.00[JPT][hapmap] |
| rs13274956 | 1.00[CHD][hapmap];1.00[JPT][hapmap] |
| rs13281702 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1375246 | 1.00[JPT][hapmap] |
| rs16912688 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs16912805 | 1.00[CHD][hapmap] |
| rs16912814 | 0.85[CHD][hapmap] |
| rs2197810 | 1.00[CHD][hapmap];1.00[JPT][hapmap] |
| rs2339303 | 1.00[JPT][hapmap] |
| rs28683647 | 1.00[ASN][1000 genomes] |
| rs4543502 | 1.00[JPT][hapmap] |
| rs4734031 | 0.87[CHD][hapmap] |
| rs4734032 | 0.87[CHD][hapmap] |
| rs4734035 | 0.85[CHD][hapmap] |
| rs4734539 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs6988446 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs6993624 | 0.86[ASN][1000 genomes] |
| rs7823182 | 1.00[CHD][hapmap];1.00[JPT][hapmap] |
| rs7828102 | 1.00[JPT][hapmap] |
| rs921231 | 1.00[CHD][hapmap];1.00[JPT][hapmap] |
| rs921232 | 1.00[CHD][hapmap];1.00[JPT][hapmap] |
| rs921235 | 1.00[JPT][hapmap] |
| rs9297893 | 1.00[JPT][hapmap] |
| rs9297895 | 1.00[CHD][hapmap] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1028628 | chr8:91680968-92418954 | Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 30 gene(s) | inside rSNPs | diseases |
| 2 | nsv539672 | chr8:91680968-92418954 | Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 30 gene(s) | inside rSNPs | diseases |
| 3 | nsv891190 | chr8:92354921-92484872 | Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv523642 | chr8:92391870-92542963 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 1 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs7818318 | OSGIN2 | cis | parietal | SCAN |
Chromatin state (count:0 , 50 per page) page:
| No data |
