Variant report

Variant	rs7818760
Chromosome Location	chr8:126324823-126324824
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:126322882..126325288-chr8:126341226..126344036,2	MCF-7	breast:
2	chr8:126322565..126325543-chr8:126398051..126400754,2	K562	blood:
3	chr8:126322775..126325077-chr8:126329486..126331781,2	K562	blood:
4	chr8:126318394..126322454-chr8:126322882..126325184,6	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10099164	0.90[ASN][1000 genomes]
rs10108110	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10505454	0.81[ASN][1000 genomes]
rs10808543	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4242368	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4319117	0.82[EUR][1000 genomes]
rs4602904	0.81[ASN][1000 genomes]
rs4871584	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6470349	0.81[ASN][1000 genomes]
rs6981550	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6989407	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7004468	0.81[ASN][1000 genomes]
rs7010333	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7015414	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7814083	0.91[ASN][1000 genomes]
rs7819612	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7820471	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7823958	0.84[EUR][1000 genomes]
rs7841947	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7844497	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949614	chr8:126063646-126376699	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
2	esv3419040	chr8:126271495-126339914	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv891436	chr8:126283766-126345076	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:126302600-126331000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:126308000-126336000	Weak transcription	Psoas Muscle	Psoas
3	chr8:126315400-126325800	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr8:126316000-126325000	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr8:126318600-126354600	Weak transcription	Ovary	ovary
6	chr8:126319400-126325200	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr8:126320000-126328200	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr8:126320200-126328800	Weak transcription	Fetal Muscle Leg	muscle
9	chr8:126320400-126326600	Weak transcription	Left Ventricle	heart
10	chr8:126321000-126329200	Weak transcription	Gastric	stomach
11	chr8:126321200-126325400	Weak transcription	Fetal Brain Male	brain
12	chr8:126321800-126325200	Enhancers	HUVEC	blood vessel
13	chr8:126322000-126328200	Weak transcription	Colonic Mucosa	Colon
14	chr8:126322000-126332000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr8:126322000-126374200	Weak transcription	Aorta	Aorta
16	chr8:126322200-126325400	Weak transcription	Fetal Heart	heart
17	chr8:126322200-126328200	Weak transcription	Small Intestine	intestine
18	chr8:126322600-126328000	Weak transcription	Placenta	Placenta
19	chr8:126322800-126325000	Enhancers	Fetal Intestine Large	intestine
20	chr8:126323200-126326200	Weak transcription	GM12878-XiMat	blood
21	chr8:126323600-126327200	Weak transcription	A549	lung
22	chr8:126323600-126330800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr8:126323600-126340200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr8:126323800-126327400	Weak transcription	Primary hematopoietic stem cells	blood
25	chr8:126323800-126328200	Weak transcription	Duodenum Mucosa	Duodenum
26	chr8:126324000-126325000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr8:126324000-126325200	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr8:126324000-126328800	Weak transcription	HSMM	muscle
29	chr8:126324000-126331600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr8:126324200-126325000	Weak transcription	Fetal Intestine Small	intestine
31	chr8:126324200-126354200	Weak transcription	Hela-S3	cervix
32	chr8:126324600-126325000	Flanking Active TSS	K562	blood
33	chr8:126324600-126325200	Enhancers	HepG2	liver
34	chr8:126324800-126325200	Enhancers	Rectal Mucosa Donor 29	rectum

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