Variant report

Variant	rs781914
Chromosome Location	chr3:191194373-191194374
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:191186829..191191395-chr3:191192771..191196675,4	K562	blood:
2	chr3:191194345..191196125-chr3:191201335..191204091,2	K562	blood:
3	chr3:191187730..191193827-chr3:191193854..191197117,6	K562	blood:
4	chr3:191158609..191160577-chr3:191193167..191196023,2	K562	blood:

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs1195742	0.85[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs1398714	0.91[AFR][1000 genomes]
rs1398715	0.87[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs1656126	0.85[AFR][1000 genomes]
rs1715645	0.84[AFR][1000 genomes]
rs176823	0.85[AFR][1000 genomes]
rs186067	0.83[AFR][1000 genomes]
rs293823	1.00[CHB][hapmap];0.86[JPT][hapmap];0.94[ASN][1000 genomes]
rs293824	0.94[ASN][1000 genomes]
rs293827	0.95[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs293828	1.00[CHB][hapmap];0.90[JPT][hapmap];0.94[ASN][1000 genomes]
rs293829	0.85[AFR][1000 genomes]
rs293830	0.85[AFR][1000 genomes]
rs293831	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs293832	0.85[AFR][1000 genomes]
rs293833	0.85[AFR][1000 genomes]
rs293834	0.84[AFR][1000 genomes]
rs366765	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs375607	0.83[AFR][1000 genomes]
rs380948	0.87[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs382512	0.85[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs383815	0.94[YRI][hapmap]
rs388737	0.97[ASN][1000 genomes]
rs391382	0.82[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs393745	0.91[AFR][1000 genomes]
rs396381	0.91[AFR][1000 genomes]
rs398498	0.91[AFR][1000 genomes]
rs401085	0.84[AFR][1000 genomes]
rs405736	0.81[AFR][1000 genomes]
rs408085	0.85[AFR][1000 genomes]
rs409461	0.91[AFR][1000 genomes]
rs410829	0.93[AFR][1000 genomes]
rs411571	0.87[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs412525	0.97[ASN][1000 genomes]
rs422820	0.91[AFR][1000 genomes]
rs422889	0.95[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs425783	0.91[AFR][1000 genomes]
rs426356	0.85[AFR][1000 genomes]
rs430388	0.85[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs430975	0.95[ASN][1000 genomes]
rs431095	0.89[AFR][1000 genomes]
rs431446	0.93[AFR][1000 genomes]
rs431601	0.91[AFR][1000 genomes]
rs433617	0.85[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs438356	0.91[AFR][1000 genomes]
rs441207	0.91[AFR][1000 genomes]
rs445237	0.91[AFR][1000 genomes]
rs446434	0.97[ASN][1000 genomes]
rs447463	0.91[AFR][1000 genomes]
rs453387	0.89[AFR][1000 genomes]
rs475354	0.93[ASN][1000 genomes]
rs489779	0.89[AFR][1000 genomes]
rs501704	0.93[ASN][1000 genomes]
rs534424	0.91[AFR][1000 genomes]
rs540805	0.87[AFR][1000 genomes]
rs542533	0.89[AFR][1000 genomes]
rs542562	0.97[ASN][1000 genomes]
rs544881	0.93[ASN][1000 genomes]
rs545100	0.91[AFR][1000 genomes]
rs545989	0.89[AFR][1000 genomes]
rs547147	0.89[AFR][1000 genomes]
rs549832	0.93[ASN][1000 genomes]
rs550120	0.95[ASN][1000 genomes]
rs550947	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs552942	0.85[AFR][1000 genomes]
rs566578	0.91[AFR][1000 genomes]
rs572324	0.91[AFR][1000 genomes]
rs574421	0.85[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs6444544	0.85[AFR][1000 genomes]
rs709146	0.85[AFR][1000 genomes]
rs803045	0.81[AFR][1000 genomes]
rs810634	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931943	chr3:190860224-191321873	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	esv2757910	chr3:190867011-191279107	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv2759209	chr3:190867011-191279107	Weak transcription Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv428428	chr3:190936834-191215596	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv534269	chr3:191037181-191261730	Flanking Bivalent TSS/Enh Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv878108	chr3:191175215-191223664	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv878109	chr3:191178925-191227296	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv1009878	chr3:191188488-191226583	Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv525219	chr3:191189132-191223664	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv1008969	chr3:191192569-191383856	Active TSS Transcr. at gene 5' and 3' Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:191192400-191194800	Enhancers	Hela-S3	cervix
2	chr3:191194000-191194400	Weak transcription	Fetal Lung	lung
3	chr3:191194000-191195000	Genic enhancers	K562	blood
4	chr3:191194200-191194800	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr3:191194200-191194800	Enhancers	Pancreatic Islets	Pancreatic Islet
6	chr3:191194200-191195000	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr3:191194200-191195600	Enhancers	Stomach Mucosa	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links