Variant report

Variant	rs78196755
Chromosome Location	chr12:8986590-8986591
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:8973639..8975831-chr12:8984866..8987670,2	K562	blood:
2	chr12:8980074..8981757-chr12:8983950..8986667,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000166535	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv521922	chr12:8986379-8991970	Enhancers Flanking Active TSS Weak transcription Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:8979000-8995400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr12:8981600-8987200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr12:8981800-8986800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr12:8981800-8987400	Weak transcription	Esophagus	oesophagus
5	chr12:8982200-9022000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr12:8982600-8988000	Weak transcription	K562	blood
7	chr12:8983400-9017600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr12:8983800-8999800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr12:8984000-8986600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr12:8984000-8987000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr12:8984400-8986600	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr12:8985200-8987600	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr12:8985400-8986600	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr12:8985400-8992400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr12:8985600-8987000	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr12:8985800-8986800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr12:8985800-8988000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr12:8986200-8987000	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr12:8986200-8987800	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr12:8986200-8987800	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr12:8986200-8988000	Enhancers	iPS-20b Cell Line	embryonic stem cell
22	chr12:8986200-8988200	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr12:8986400-8987600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr12:8986400-8987600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr12:8986400-8988200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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