Variant report

Variant	rs7820368
Chromosome Location	chr8:110213070-110213071
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11985483	0.80[AMR][1000 genomes]
rs11990328	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11997273	0.80[AMR][1000 genomes]
rs11997627	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11998117	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs16879252	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16879260	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6469251	0.80[AMR][1000 genomes]
rs6992830	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7008315	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7813597	0.80[AMR][1000 genomes]
rs7813911	0.80[AMR][1000 genomes]
rs7825760	0.80[AMR][1000 genomes]
rs7842107	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023204	chr8:110169573-110303085	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1031663	chr8:110177432-110303085	Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:110191400-110237400	Weak transcription	Left Ventricle	heart
2	chr8:110202000-110221400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr8:110204800-110230600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr8:110211200-110213400	Weak transcription	Psoas Muscle	Psoas
5	chr8:110211200-110311600	Weak transcription	Right Ventricle	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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