Variant report

Variant	rs7820832
Chromosome Location	chr8:110870227-110870228
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11989628	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11998022	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs16880295	1.00[GIH][hapmap]
rs1948891	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.80[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap]
rs2350410	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7003810	1.00[GIH][hapmap]
rs735913	1.00[GIH][hapmap]
rs746596	1.00[GIH][hapmap]
rs7812467	0.91[EUR][1000 genomes]
rs7821449	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7821806	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7825332	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7825693	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7829748	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7843527	1.00[CEU][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033321	chr8:110826297-111131801	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1019284	chr8:110866196-111221890	Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7820832	C1orf115	trans	lymphoblastoid	seeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:110868200-110870400	Enhancers	Fetal Heart	heart
2	chr8:110869200-110870600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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