Variant report

Variant	rs78209137
Chromosome Location	chr2:40393536-40393537
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:40390508..40393940-chr2:40401107..40404487,3	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529606	chr2:40206280-40896881	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv873902	chr2:40231282-40466268	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1004092	chr2:40264608-40451701	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1000572	chr2:40271958-40458911	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv535654	chr2:40271958-40458911	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv581502	chr2:40273903-40459645	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv873904	chr2:40292289-40466268	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv873910	chr2:40391907-40466268	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	esv1851152	chr2:40393223-40512023	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:40357800-40406400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr2:40365200-40396200	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr2:40366600-40403000	Weak transcription	Brain Germinal Matrix	brain
4	chr2:40375600-40401800	Weak transcription	HSMMtube	muscle
5	chr2:40376800-40394200	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr2:40378000-40399000	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr2:40381600-40398800	Weak transcription	Brain Angular Gyrus	brain
8	chr2:40381800-40395200	Weak transcription	Spleen	Spleen
9	chr2:40386000-40395200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr2:40386000-40395200	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr2:40386400-40395200	Weak transcription	Fetal Intestine Large	intestine
12	chr2:40388400-40396400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr2:40388600-40395200	Weak transcription	Duodenum Mucosa	Duodenum
14	chr2:40389400-40396200	Weak transcription	Placenta	Placenta
15	chr2:40390600-40395200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr2:40390800-40395200	Weak transcription	Fetal Intestine Small	intestine
17	chr2:40391600-40397600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr2:40391800-40393600	Enhancers	Right Ventricle	heart
19	chr2:40392000-40393600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr2:40392000-40393600	Weak transcription	Brain Anterior Caudate	brain
21	chr2:40392000-40393600	Enhancers	Gastric	stomach
22	chr2:40392000-40393600	Enhancers	Left Ventricle	heart
23	chr2:40392000-40393600	Enhancers	Right Atrium	heart
24	chr2:40392000-40393800	Enhancers	Rectal Smooth Muscle	rectum
25	chr2:40392000-40394200	Enhancers	Colon Smooth Muscle	Colon
26	chr2:40392000-40395200	Weak transcription	Small Intestine	intestine
27	chr2:40392000-40413200	Weak transcription	Fetal Brain Female	brain
28	chr2:40392200-40393600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr2:40392200-40393600	Enhancers	Fetal Stomach	stomach
30	chr2:40392200-40394000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr2:40392400-40396200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr2:40392600-40396000	Weak transcription	HSMM	muscle
33	chr2:40392600-40405200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr2:40392800-40394200	Enhancers	Fetal Heart	heart
35	chr2:40392800-40395600	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr2:40392800-40397400	Weak transcription	Dnd41	blood
37	chr2:40393000-40393600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr2:40393000-40393600	Enhancers	Cortex derived primary cultured neurospheres	brain
39	chr2:40393000-40393600	Enhancers	Stomach Smooth Muscle	stomach
40	chr2:40393000-40395600	Weak transcription	Osteobl	bone
41	chr2:40393000-40398000	Weak transcription	Fetal Brain Male	brain
42	chr2:40393000-40420000	Weak transcription	Fetal Kidney	kidney
43	chr2:40393200-40393600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr2:40393200-40393600	Enhancers	Colonic Mucosa	Colon
45	chr2:40393200-40401200	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr2:40393400-40393600	Weak transcription	Fetal Muscle Trunk	muscle
47	chr2:40393400-40394600	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr2:40393400-40395200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr2:40393400-40395200	Weak transcription	Primary monocytes fromperipheralblood	blood
50	chr2:40393400-40396200	Weak transcription	Fetal Muscle Leg	muscle

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