Variant report

Variant	rs7821422
Chromosome Location	chr8:106916295-106916296
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12543407	0.86[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs12547864	0.86[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs12677993	0.86[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs2088267	0.87[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs59145402	0.83[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs6469019	0.87[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs6469020	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6995395	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7001731	0.86[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs7013271	0.89[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs73310939	0.86[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs7829063	0.85[AFR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv891261	chr8:106880649-106932634	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv611840	chr8:106913294-107265915	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:106913600-106917400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr8:106915200-106920600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr8:106915200-106930200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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