Variant report

Variant	rs7823557
Chromosome Location	chr8:10067041-10067042
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10100022	0.90[ASN][1000 genomes]
rs11990555	0.90[ASN][1000 genomes]
rs28411081	0.90[ASN][1000 genomes]
rs58176018	0.85[ASN][1000 genomes]
rs58913892	0.90[ASN][1000 genomes]
rs59337645	0.95[ASN][1000 genomes]
rs60510197	0.95[ASN][1000 genomes]
rs73191562	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73664934	0.85[ASN][1000 genomes]
rs7823714	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7827921	1.00[ASN][1000 genomes]
rs7832670	0.90[ASN][1000 genomes]
rs7843443	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv610263	chr8:9941021-10090149	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv831230	chr8:9953343-10139350	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1021921	chr8:9958259-10212555	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv831231	chr8:10001214-10189094	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1026335	chr8:10037279-10139782	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv1030934	chr8:10065169-10561161	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10050000-10068000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr8:10053800-10087000	Weak transcription	Spleen	Spleen
3	chr8:10055400-10074600	Weak transcription	Left Ventricle	heart
4	chr8:10055400-10078400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr8:10055600-10086200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr8:10058400-10077600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr8:10058400-10086200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr8:10060200-10103000	Weak transcription	Gastric	stomach
9	chr8:10061200-10074400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr8:10061400-10071200	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr8:10062400-10068000	Enhancers	Fetal Brain Male	brain
12	chr8:10062600-10078200	Weak transcription	Pancreas	Pancrea
13	chr8:10062600-10078400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr8:10062800-10067400	Weak transcription	Primary T cells from cord blood	blood
15	chr8:10062800-10078200	Weak transcription	Brain Hippocampus Middle	brain
16	chr8:10063400-10069200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr8:10063400-10075200	Weak transcription	Primary hematopoietic stem cells	blood
18	chr8:10063600-10075400	Weak transcription	Brain Substantia Nigra	brain
19	chr8:10064400-10072600	Weak transcription	Lung	lung
20	chr8:10064400-10073000	Weak transcription	Aorta	Aorta
21	chr8:10064400-10086000	Weak transcription	Brain Anterior Caudate	brain
22	chr8:10064600-10067600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr8:10064600-10071200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr8:10064800-10079600	Weak transcription	Primary B cells from cord blood	blood
25	chr8:10065000-10071000	Weak transcription	Adipose Nuclei	Adipose
26	chr8:10065000-10071600	Weak transcription	Primary T helper cells fromperipheralblood	blood
27	chr8:10065000-10073400	Weak transcription	Stomach Smooth Muscle	stomach
28	chr8:10065200-10070400	Weak transcription	Brain Cingulate Gyrus	brain
29	chr8:10065200-10078400	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr8:10065400-10071800	Weak transcription	Brain Germinal Matrix	brain
31	chr8:10065800-10067400	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr8:10066000-10071600	Weak transcription	Fetal Brain Female	brain
33	chr8:10066200-10071600	Weak transcription	Fetal Muscle Leg	muscle
34	chr8:10066400-10067200	Weak transcription	Ovary	ovary
35	chr8:10066400-10069200	Strong transcription	Cortex derived primary cultured neurospheres	brain
36	chr8:10066400-10074400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr8:10066600-10067400	Weak transcription	Primary B cells from peripheral blood	blood
38	chr8:10066800-10074400	Weak transcription	Right Ventricle	heart
39	chr8:10067000-10068000	Strong transcription	Liver	Liver

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