Variant report

Variant	rs7824154
Chromosome Location	chr8:121623848-121623849
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:121621876..121624440-chr8:121626414..121628538,2	MCF-7	breast:
2	chr8:121619967..121621577-chr8:121621884..121624584,2	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10089944	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10099784	0.96[ASN][1000 genomes]
rs10102980	0.96[ASN][1000 genomes]
rs10103010	0.96[ASN][1000 genomes]
rs10104248	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10104255	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10108821	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10109195	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10113166	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28415690	0.83[EUR][1000 genomes]
rs28561998	0.83[EUR][1000 genomes]
rs28716772	0.83[EUR][1000 genomes]
rs4259452	0.99[ASN][1000 genomes]
rs4329308	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4338145	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4448320	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4514023	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4514024	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4610796	0.93[ASN][1000 genomes]
rs55646138	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55704534	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57622256	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57854118	0.83[EUR][1000 genomes]
rs58181006	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs58342310	0.81[EUR][1000 genomes]
rs58929354	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs59896584	0.81[EUR][1000 genomes]
rs60307797	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61312574	0.83[EUR][1000 genomes]
rs6469936	0.83[EUR][1000 genomes]
rs6981454	0.83[EUR][1000 genomes]
rs7010052	0.81[EUR][1000 genomes]
rs7017780	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72680565	0.81[EUR][1000 genomes]
rs72680599	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73708912	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7812594	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7814782	0.96[ASN][1000 genomes]
rs7824846	0.83[EUR][1000 genomes]
rs7827232	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7827807	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7835353	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7845469	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891421	chr8:121292407-121653902	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv612113	chr8:121616345-121635396	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:121587800-121640600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr8:121588200-121642400	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr8:121588600-121636600	Weak transcription	Primary B cells from cord blood	blood
4	chr8:121602000-121627600	Weak transcription	Aorta	Aorta
5	chr8:121603200-121626400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr8:121605800-121644400	Weak transcription	Gastric	stomach
7	chr8:121606200-121626200	Weak transcription	HSMMtube	muscle
8	chr8:121607600-121643000	Weak transcription	Fetal Intestine Large	intestine
9	chr8:121609600-121641000	Weak transcription	Lung	lung
10	chr8:121609800-121629000	Weak transcription	Fetal Muscle Leg	muscle
11	chr8:121609800-121629000	Weak transcription	Fetal Stomach	stomach
12	chr8:121610400-121627400	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr8:121610800-121629800	Weak transcription	Primary hematopoietic stem cells	blood
14	chr8:121611400-121624400	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr8:121613200-121668000	Weak transcription	Pancreas	Pancrea
16	chr8:121613400-121637200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr8:121614800-121627600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr8:121615400-121624400	Strong transcription	Monocytes-CD14+_RO01746	blood
19	chr8:121616000-121637200	Weak transcription	HSMM	muscle
20	chr8:121616600-121639000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr8:121616800-121624400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr8:121618000-121626000	Weak transcription	Osteobl	bone
23	chr8:121618000-121629000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr8:121618200-121626600	Weak transcription	NHLF	lung
25	chr8:121618200-121634000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr8:121618400-121637200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr8:121618800-121624600	Strong transcription	HepG2	liver
28	chr8:121619000-121633400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr8:121621600-121630200	Strong transcription	Liver	Liver
30	chr8:121621800-121629000	Weak transcription	Fetal Muscle Trunk	muscle
31	chr8:121621800-121644400	Weak transcription	Spleen	Spleen
32	chr8:121622000-121627400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr8:121622800-121624400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr8:121622800-121626000	Strong transcription	Primary monocytes fromperipheralblood	blood
35	chr8:121623000-121624400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr8:121623000-121635000	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr8:121623200-121625000	Enhancers	Primary T helper cells PMA-I stimulated	--
38	chr8:121623400-121637400	Weak transcription	H1 Cell Line	embryonic stem cell
39	chr8:121623400-121647600	Weak transcription	Fetal Intestine Small	intestine
40	chr8:121623600-121624800	Enhancers	Primary T cells from cord blood	blood
41	chr8:121623800-121624200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
42	chr8:121623800-121626200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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