Variant report

Variant	rs7824436
Chromosome Location	chr8:121177781-121177782
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs4364673	1.00[ASN][1000 genomes]
rs4376529	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4871038	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs4871046	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs58517661	1.00[ASN][1000 genomes]
rs59742638	0.85[EUR][1000 genomes]
rs73317779	0.85[EUR][1000 genomes]
rs73317783	0.85[EUR][1000 genomes]
rs7820004	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7838551	1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891418	chr8:120600965-121301474	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	esv3348294	chr8:121000288-121250984	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:121159600-121186200	Weak transcription	Fetal Muscle Trunk	muscle
2	chr8:121167000-121178000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr8:121170800-121179600	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr8:121172600-121178400	Enhancers	Fetal Intestine Small	intestine
5	chr8:121173400-121178800	Weak transcription	Colon Smooth Muscle	Colon
6	chr8:121173600-121178400	Enhancers	Fetal Intestine Large	intestine
7	chr8:121174200-121179600	Weak transcription	Stomach Smooth Muscle	stomach
8	chr8:121174200-121179800	Weak transcription	Rectal Smooth Muscle	rectum
9	chr8:121175600-121179400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr8:121175600-121183600	Weak transcription	Duodenum Mucosa	Duodenum
11	chr8:121176400-121180200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr8:121176600-121177800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr8:121176600-121178400	Enhancers	Ovary	ovary
14	chr8:121176600-121180400	Enhancers	Fetal Lung	lung
15	chr8:121176800-121177800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr8:121176800-121178200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr8:121176800-121178400	Enhancers	Osteobl	bone
18	chr8:121176800-121179200	Enhancers	Aorta	Aorta
19	chr8:121177400-121177800	Enhancers	Fetal Stomach	stomach
20	chr8:121177600-121177800	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr8:121177600-121178200	Enhancers	Fetal Muscle Leg	muscle
22	chr8:121177600-121178400	Enhancers	Placenta	Placenta
23	chr8:121177600-121181200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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