Variant report

Variant	rs7824740
Chromosome Location	chr8:130773885-130773886
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs16904167	1.00[TSI][hapmap]
rs16904172	1.00[TSI][hapmap]
rs16904177	1.00[TSI][hapmap]
rs1842792	1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59234148	1.00[EUR][1000 genomes]
rs61207482	1.00[EUR][1000 genomes]
rs7003594	1.00[EUR][1000 genomes]
rs7008330	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73406824	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73406828	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7822504	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7824719	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7825839	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428524	chr8:130731660-130894467	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1023632	chr8:130767066-130777995	Weak transcription Strong transcription Bivalent Enhancer Enhancers Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130765800-130779200	Weak transcription	Spleen	Spleen
2	chr8:130767200-130774800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr8:130767200-130780600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr8:130771800-130776000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr8:130773200-130776000	Strong transcription	NHEK	skin
6	chr8:130773400-130775000	Strong transcription	Esophagus	oesophagus

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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