Variant report
| Variant | rs7824852 |
|---|---|
| Chromosome Location | chr8:34840279-34840280 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs10095892 | 1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs10100037 | 0.88[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs10100826 | 0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs10103055 | 0.88[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs10103980 | 0.86[EUR][1000 genomes] |
| rs10112892 | 0.83[EUR][1000 genomes] |
| rs11985082 | 0.91[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs13439316 | 0.91[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs16883296 | 0.91[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs16883314 | 0.88[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs16883318 | 0.82[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs16883376 | 0.88[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs28722910 | 0.88[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs4428666 | 0.88[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs67632002 | 0.88[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs6995753 | 0.86[EUR][1000 genomes] |
| rs7017513 | 0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs72631003 | 0.83[EUR][1000 genomes] |
| rs7817114 | 0.88[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs7839246 | 0.82[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs7840788 | 0.91[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs7843585 | 0.82[AMR][1000 genomes];0.86[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1017085 | chr8:34742896-35594241 | Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv539546 | chr8:34742896-35594241 | Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | esv2764070 | chr8:34832017-34857556 | Enhancers Weak transcription Flanking Active TSS | n/a | n/a | inside rSNPs | diseases |
| 4 | esv2761231 | chr8:34838312-34854498 | Enhancers Weak transcription Flanking Active TSS | n/a | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:34836800-34844200 | Weak transcription | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
