Variant report

Variant	rs7824985
Chromosome Location	chr8:90624692-90624693
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:90497830..90499463-chr8:90622312..90625050,2	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10098388	0.94[JPT][hapmap];0.93[YRI][hapmap];0.87[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs12544070	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12546549	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12549269	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1397309	0.90[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs1397310	0.91[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs1510468	0.91[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs1510469	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17696834	0.83[CEU][hapmap]
rs28433004	0.88[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs4145788	0.89[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs593072	0.95[ASN][1000 genomes]
rs656153	0.88[JPT][hapmap]
rs7818490	0.87[CEU][hapmap]
rs7846036	0.87[CEU][hapmap]
rs9297690	0.88[JPT][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv465735	chr8:89760311-90729507	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv611714	chr8:89760311-90729507	Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Weak transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv1028969	chr8:90475194-90650295	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv427825	chr8:90495139-90653696	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv870380	chr8:90546585-90720182	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv1028026	chr8:90553930-90678631	Genic enhancers Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
7	nsv982109	chr8:90556188-90703631	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
8	nsv1026523	chr8:90558935-90722580	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
9	nsv1019986	chr8:90570309-90628648	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
10	nsv831389	chr8:90575517-90753120	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
11	nsv1017263	chr8:90605445-90722580	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:90599600-90650800	Weak transcription	Left Ventricle	heart
2	chr8:90616000-90630000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr8:90616000-90652600	Weak transcription	Ovary	ovary
4	chr8:90621200-90625600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr8:90621200-90637600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr8:90622400-90630800	Weak transcription	Fetal Muscle Leg	muscle
7	chr8:90622600-90625600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr8:90622800-90625000	Enhancers	Fetal Intestine Large	intestine
9	chr8:90622800-90625800	Enhancers	HUVEC	blood vessel
10	chr8:90623000-90625000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr8:90623200-90625600	Enhancers	Osteobl	bone
12	chr8:90623400-90625400	Enhancers	Hela-S3	cervix
13	chr8:90623600-90624800	Enhancers	Fetal Intestine Small	intestine
14	chr8:90623600-90628000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr8:90624000-90625000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr8:90624000-90629400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr8:90624000-90629400	Enhancers	NHEK	skin
18	chr8:90624200-90625600	Enhancers	Muscle Satellite Cultured Cells	--
19	chr8:90624200-90625800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr8:90624200-90625800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr8:90624200-90629400	Enhancers	HMEC	breast
22	chr8:90624400-90624800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr8:90624400-90624800	Enhancers	HepG2	liver
24	chr8:90624400-90625000	Flanking Active TSS	A549	lung
25	chr8:90624400-90625000	Enhancers	NH-A	brain
26	chr8:90624400-90640400	Weak transcription	Aorta	Aorta
27	chr8:90624600-90624800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr8:90624600-90625000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr8:90624600-90625600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr8:90624600-90625600	Enhancers	NHDF-Ad	bronchial
31	chr8:90624600-90628000	Weak transcription	NHLF	lung
32	chr8:90624600-90628200	Weak transcription	HSMM	muscle
33	chr8:90624600-90630200	Weak transcription	HSMMtube	muscle
34	chr8:90624600-90642800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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