Variant report

Variant	rs7825266
Chromosome Location	chr8:124402368-124402369
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:124387035..124391510-chr8:124401759..124405687,5	MCF-7	breast:
2	chr8:124400194..124404389-chr8:124428403..124431534,4	K562	blood:
3	chr8:124382116..124384536-chr8:124401855..124404797,2	K562	blood:
4	chr8:124284432..124288167-chr8:124401807..124404794,4	MCF-7	breast:
5	chr8:124379825..124381817-chr8:124401527..124404131,2	K562	blood:

Variant related genes	Relation type
ENSG00000156795	Chromatin interaction
ENSG00000165156	Chromatin interaction
ENSG00000156802	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11991144	0.83[AMR][1000 genomes]
rs11992098	0.83[AMR][1000 genomes]
rs11992167	0.83[AMR][1000 genomes]
rs11996182	0.85[AFR][1000 genomes]
rs16898144	0.83[AMR][1000 genomes]
rs16898172	1.00[AMR][1000 genomes]
rs73703770	0.83[AMR][1000 genomes]
rs73703771	0.83[AMR][1000 genomes]
rs7817491	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831449	chr8:124276685-124471740	Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124341600-124406800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr8:124374000-124406800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr8:124374400-124407000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr8:124379000-124407200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr8:124380000-124405600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr8:124385200-124402600	Weak transcription	HMEC	breast
7	chr8:124385200-124407400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr8:124387800-124406600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr8:124389000-124407200	Weak transcription	Fetal Muscle Trunk	muscle
10	chr8:124390000-124404800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr8:124390200-124407200	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr8:124391800-124402400	Weak transcription	Primary B cells from peripheral blood	blood
13	chr8:124391800-124402600	Weak transcription	NHEK	skin
14	chr8:124391800-124404000	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr8:124392000-124404000	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr8:124392200-124402800	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr8:124393200-124403800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr8:124393800-124403800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr8:124394200-124406600	Weak transcription	Small Intestine	intestine
20	chr8:124394400-124402400	Weak transcription	Stomach Mucosa	stomach
21	chr8:124394400-124407000	Weak transcription	Fetal Intestine Large	intestine
22	chr8:124395000-124407000	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr8:124397000-124405400	Weak transcription	Left Ventricle	heart
24	chr8:124397000-124406800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr8:124397000-124407000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr8:124397000-124407000	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr8:124397000-124407200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr8:124398800-124402400	Weak transcription	Thymus	Thymus
29	chr8:124398800-124406800	Weak transcription	Primary monocytes fromperipheralblood	blood
30	chr8:124398800-124407000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr8:124398800-124407000	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr8:124399000-124404000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr8:124399000-124407000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr8:124399000-124407000	Weak transcription	Fetal Kidney	kidney
35	chr8:124399000-124407200	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr8:124399200-124405800	Weak transcription	Brain Germinal Matrix	brain
37	chr8:124399200-124407000	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr8:124399200-124407200	Weak transcription	Primary neutrophils fromperipheralblood	blood
39	chr8:124399200-124407200	Weak transcription	Fetal Brain Male	brain
40	chr8:124399800-124403800	Weak transcription	HSMM	muscle
41	chr8:124399800-124406800	Weak transcription	Fetal Muscle Leg	muscle
42	chr8:124399800-124407000	Weak transcription	Brain Anterior Caudate	brain
43	chr8:124400000-124402400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr8:124400000-124402600	Weak transcription	Fetal Heart	heart
45	chr8:124400000-124402600	Genic enhancers	K562	blood
46	chr8:124400000-124406200	Weak transcription	Primary hematopoietic stem cells	blood
47	chr8:124400000-124406400	Weak transcription	Brain Angular Gyrus	brain
48	chr8:124400000-124406600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr8:124400000-124406800	Strong transcription	HUES64 Cell Line	embryonic stem cell
50	chr8:124400000-124406800	Weak transcription	Primary B cells from cord blood	blood

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