Variant report

Variant	rs7825904
Chromosome Location	chr8:119929288-119929289
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:119927571..119930099-chr8:119939839..119941774,2	MCF-7	breast:
2	chr8:119921054..119923444-chr8:119928585..119930805,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164761	Chromatin interaction

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs11573938	0.89[GIH][hapmap]
rs11573961	0.95[ASN][1000 genomes]
rs11780196	0.94[ASN][1000 genomes]
rs12335174	1.00[CHB][hapmap];0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs12386806	1.00[CHB][hapmap];0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs12386956	1.00[CHB][hapmap];0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs12386959	0.86[ASN][1000 genomes]
rs12386960	1.00[CHB][hapmap];0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs12675085	0.94[ASN][1000 genomes]
rs13253150	0.98[ASN][1000 genomes]
rs13276824	0.98[ASN][1000 genomes]
rs1385504	1.00[CHB][hapmap];0.96[CHD][hapmap];0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs1385505	0.89[CHB][hapmap];0.92[CHD][hapmap];0.84[ASN][1000 genomes]
rs1564858	0.92[GIH][hapmap]
rs17758011	0.81[ASN][1000 genomes]
rs2326049	0.86[ASN][1000 genomes]
rs3102725	1.00[CHB][hapmap];0.96[CHD][hapmap];0.88[JPT][hapmap];0.87[ASN][1000 genomes]
rs3102726	1.00[CHB][hapmap];0.89[JPT][hapmap];0.87[ASN][1000 genomes]
rs3102729	1.00[CHB][hapmap];0.89[JPT][hapmap];0.87[ASN][1000 genomes]
rs3102730	0.87[ASN][1000 genomes]
rs3102731	1.00[CHB][hapmap];0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs3102733	1.00[CHB][hapmap];0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs3102734	1.00[CHB][hapmap];0.92[CHD][hapmap];0.89[JPT][hapmap];0.87[ASN][1000 genomes]
rs3102735	1.00[CHB][hapmap];0.96[CHD][hapmap];0.89[JPT][hapmap];0.87[ASN][1000 genomes]
rs3103994	0.91[ASN][1000 genomes]
rs3103996	0.87[ASN][1000 genomes]
rs3134046	0.95[ASN][1000 genomes]
rs3134050	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3134059	1.00[CHB][hapmap];0.89[JPT][hapmap];0.87[ASN][1000 genomes]
rs3134060	1.00[CHB][hapmap];0.96[CHD][hapmap];0.89[JPT][hapmap];0.87[ASN][1000 genomes]
rs3134061	1.00[CHB][hapmap];0.92[CHD][hapmap];0.89[JPT][hapmap];0.87[ASN][1000 genomes]
rs3134062	1.00[CHB][hapmap];0.96[CHD][hapmap];0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs3134064	0.86[ASN][1000 genomes]
rs3134066	1.00[CHB][hapmap];0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs3134067	1.00[CHB][hapmap];0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs3134068	1.00[CHB][hapmap];0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs3134069	1.00[CHB][hapmap];0.96[CHD][hapmap];0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs3134070	1.00[CHB][hapmap];0.96[CHD][hapmap];0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs3134071	0.86[ASN][1000 genomes]
rs3134072	1.00[CHB][hapmap];0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs3134073	1.00[CHB][hapmap];0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs3134088	0.86[ASN][1000 genomes]
rs3134092	0.91[ASN][1000 genomes]
rs3134095	0.87[ASN][1000 genomes]
rs4291298	0.97[ASN][1000 genomes]
rs4377989	0.94[ASN][1000 genomes]
rs4466434	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4477060	0.94[ASN][1000 genomes]
rs4593581	0.94[ASN][1000 genomes]
rs4599840	0.94[ASN][1000 genomes]
rs4876867	0.98[ASN][1000 genomes]
rs4876868	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4876872	1.00[CHB][hapmap];0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs4876873	1.00[CHB][hapmap];0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs6469781	0.94[ASN][1000 genomes]
rs6469782	0.94[ASN][1000 genomes]
rs7825032	0.94[ASN][1000 genomes]
rs7829393	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868916	chr8:119911943-120762250	Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv8383	chr8:119926155-119934422	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119926800-119934600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr8:119927000-119935400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr8:119927000-119935600	Weak transcription	Osteobl	bone
4	chr8:119927200-119936400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr8:119927400-119941400	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr8:119928200-119936200	Weak transcription	Fetal Intestine Large	intestine
7	chr8:119928400-119936600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr8:119928600-119929400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr8:119928800-119929400	Enhancers	NHLF	lung
10	chr8:119928800-119956600	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr8:119929000-119935400	Weak transcription	NHDF-Ad	bronchial
12	chr8:119929000-119936400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr8:119929000-119940400	Weak transcription	HSMMtube	muscle
14	chr8:119929200-119935400	Weak transcription	Hela-S3	cervix
15	chr8:119929200-119936200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr8:119929200-119936200	Weak transcription	HSMM	muscle
17	chr8:119929200-119936400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr8:119929200-119936600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr8:119929200-119947400	Weak transcription	NH-A	brain

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