Variant report

Variant	rs7825927
Chromosome Location	chr8:118907974-118907975
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:118906865..118908986-chr8:118910823..118912929,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs13252084	0.87[YRI][hapmap]
rs13265594	0.90[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2019967	0.91[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs3101575	0.82[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs3101576	0.81[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs3101578	0.91[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs3134312	0.91[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs3134313	0.91[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs4242577	0.91[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs4401892	0.91[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4480147	1.00[CHB][hapmap];0.91[YRI][hapmap];0.93[ASN][1000 genomes]
rs4480148	0.86[YRI][hapmap]
rs4621831	0.86[YRI][hapmap]
rs4876768	0.91[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs57705462	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6999867	0.91[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs7004615	0.93[ASN][1000 genomes]
rs7459527	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7831208	0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019636	chr8:118598433-118946091	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv539734	chr8:118598433-118946091	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv933516	chr8:118764605-119009093	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1030459	chr8:118840179-119155835	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv831440	chr8:118871930-119052269	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv891411	chr8:118891896-118942698	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1032355	chr8:118896733-119003223	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv465785	chr8:118901928-118970300	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv612046	chr8:118901928-118970300	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:118881400-118917400	Weak transcription	Esophagus	oesophagus
2	chr8:118888200-118908600	Weak transcription	Rectal Smooth Muscle	rectum
3	chr8:118890000-118914600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr8:118891200-118910400	Weak transcription	Psoas Muscle	Psoas
5	chr8:118894600-118912200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr8:118896800-118909000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr8:118897600-118908000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr8:118901600-118908600	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr8:118901600-118908800	Weak transcription	Fetal Intestine Small	intestine
10	chr8:118901600-118909200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr8:118901800-118908600	Weak transcription	Fetal Muscle Leg	muscle
12	chr8:118904000-118910600	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr8:118904400-118912600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr8:118904600-118908000	Weak transcription	Brain Germinal Matrix	brain
15	chr8:118905200-118908200	Weak transcription	NHEK	skin
16	chr8:118905200-118909000	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr8:118905200-118911200	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr8:118905200-118912200	Enhancers	Fetal Lung	lung
19	chr8:118905600-118914400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr8:118905800-118908000	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr8:118905800-118908200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr8:118905800-118909800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr8:118905800-118911200	Enhancers	Aorta	Aorta
24	chr8:118905800-118911600	Weak transcription	Fetal Brain Male	brain
25	chr8:118906000-118908600	Weak transcription	Stomach Mucosa	stomach
26	chr8:118906000-118909000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr8:118906000-118910400	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr8:118906000-118911600	Weak transcription	Fetal Brain Female	brain
29	chr8:118906000-118912200	Weak transcription	Gastric	stomach
30	chr8:118906000-118917600	Enhancers	NHLF	lung
31	chr8:118906200-118908000	Weak transcription	Pancreas	Pancrea
32	chr8:118906200-118908600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr8:118906200-118908800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr8:118906200-118909000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr8:118906200-118909000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr8:118906200-118909200	Enhancers	Stomach Smooth Muscle	stomach
37	chr8:118906200-118909600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr8:118906400-118908200	Weak transcription	Fetal Stomach	stomach
39	chr8:118906400-118908200	Weak transcription	HMEC	breast
40	chr8:118906400-118908800	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr8:118906400-118908800	Weak transcription	Ovary	ovary
42	chr8:118906400-118909200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr8:118906400-118909400	Weak transcription	Brain Cingulate Gyrus	brain
44	chr8:118906400-118909400	Weak transcription	Brain Substantia Nigra	brain
45	chr8:118906600-118908200	Enhancers	Right Atrium	heart
46	chr8:118906600-118915000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr8:118907000-118908000	Enhancers	HSMMtube	muscle
48	chr8:118907000-118908200	Enhancers	HUVEC	blood vessel
49	chr8:118907000-118908400	Enhancers	Sigmoid Colon	Sigmoid Colon
50	chr8:118907000-118908800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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