Variant report

Variant	rs7825930
Chromosome Location	chr8:131398770-131398771
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11996310	0.91[AFR][1000 genomes]
rs12155939	1.00[ASN][1000 genomes]
rs3924350	0.94[YRI][hapmap]
rs73425525	0.90[AFR][1000 genomes]
rs9649962	1.00[YRI][hapmap];0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869334	chr8:131025093-131651487	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv915580	chr8:131025093-131667578	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv533085	chr8:131042781-131755007	Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv982153	chr8:131391067-131407495	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:131371600-131419800	Weak transcription	Aorta	Aorta
2	chr8:131374600-131409000	Weak transcription	Fetal Brain Female	brain
3	chr8:131381000-131401400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr8:131381400-131400000	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr8:131382600-131398800	Weak transcription	Lung	lung
6	chr8:131383800-131409200	Weak transcription	Right Atrium	heart
7	chr8:131384000-131400800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr8:131384800-131408200	Weak transcription	Adipose Nuclei	Adipose
9	chr8:131384800-131408800	Weak transcription	Brain Germinal Matrix	brain
10	chr8:131385800-131408600	Weak transcription	Fetal Brain Male	brain
11	chr8:131388600-131398800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr8:131388600-131400200	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr8:131388600-131407200	Weak transcription	HSMM	muscle
14	chr8:131388800-131400400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr8:131388800-131400600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr8:131388800-131400800	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr8:131388800-131408400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr8:131389400-131409200	Weak transcription	Pancreas	Pancrea
19	chr8:131389600-131399200	Strong transcription	NHEK	skin
20	chr8:131390000-131400400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr8:131390200-131399000	Strong transcription	Fetal Muscle Leg	muscle
22	chr8:131390400-131400200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr8:131390400-131401000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr8:131390400-131407200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr8:131390800-131401200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr8:131390800-131401400	Weak transcription	Liver	Liver
27	chr8:131390800-131407000	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr8:131392200-131399200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr8:131392200-131400200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr8:131392400-131407600	Weak transcription	HSMMtube	muscle
31	chr8:131392800-131399400	Strong transcription	A549	lung
32	chr8:131393000-131400400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr8:131393000-131401000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr8:131393200-131399000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr8:131394000-131399000	Strong transcription	Cortex derived primary cultured neurospheres	brain
36	chr8:131394200-131408800	Weak transcription	NH-A	brain
37	chr8:131395000-131399000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr8:131395200-131399400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr8:131395400-131399000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
40	chr8:131395400-131399200	Strong transcription	Fetal Muscle Trunk	muscle
41	chr8:131395600-131400400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr8:131395600-131434200	Weak transcription	Hela-S3	cervix
43	chr8:131396000-131399400	Strong transcription	HUVEC	blood vessel
44	chr8:131396200-131399400	Strong transcription	HMEC	breast
45	chr8:131396200-131408600	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr8:131396400-131399200	Strong transcription	HepG2	liver
47	chr8:131396600-131398800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr8:131396600-131398800	Strong transcription	Muscle Satellite Cultured Cells	--
49	chr8:131396800-131399200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr8:131396800-131400200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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