Variant report

Variant	rs7826132
Chromosome Location	chr8:124934256-124934257
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs4504619	0.84[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033617	chr8:124895516-125012783	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1035035	chr8:124895516-125020472	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv612141	chr8:124895809-125006490	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv612142	chr8:124896389-125006490	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv612143	chr8:124927711-124988267	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7826132	TATDN1	cis	parietal	SCAN
rs7826132	TATDN1	cis	cerebellum	SCAN

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124931000-124934600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr8:124931400-124936000	Enhancers	Fetal Intestine Large	intestine
3	chr8:124932400-124934400	Enhancers	Fetal Intestine Small	intestine
4	chr8:124932600-124935800	Enhancers	Primary hematopoietic stem cells	blood
5	chr8:124932800-124934600	Enhancers	Stomach Mucosa	stomach
6	chr8:124932800-124935000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr8:124933200-124934400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr8:124933400-124934400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr8:124933600-124934400	Enhancers	Fetal Muscle Leg	muscle
10	chr8:124933600-124935400	Enhancers	Placenta	Placenta
11	chr8:124933800-124934400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr8:124933800-124934400	Enhancers	Pancreas	Pancrea
13	chr8:124933800-124934600	Enhancers	Sigmoid Colon	Sigmoid Colon
14	chr8:124933800-124934800	Enhancers	Brain Germinal Matrix	brain
15	chr8:124933800-124934800	Enhancers	Esophagus	oesophagus
16	chr8:124933800-124935400	Enhancers	Gastric	stomach
17	chr8:124933800-124935400	Enhancers	Lung	lung
18	chr8:124933800-124935600	Enhancers	HUVEC	blood vessel
19	chr8:124934000-124934400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr8:124934000-124934400	Enhancers	Brain Hippocampus Middle	brain
21	chr8:124934000-124934400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr8:124934000-124934400	Enhancers	Ovary	ovary
23	chr8:124934000-124934400	Enhancers	Right Atrium	heart
24	chr8:124934000-124934600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr8:124934000-124934600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr8:124934000-124934600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
27	chr8:124934000-124934600	Enhancers	NHEK	skin
28	chr8:124934000-124934800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr8:124934000-124934800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr8:124934000-124934800	Enhancers	Fetal Stomach	stomach
31	chr8:124934000-124934800	Enhancers	Left Ventricle	heart
32	chr8:124934000-124934800	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
33	chr8:124934000-124935000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr8:124934000-124935000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
35	chr8:124934000-124935000	Active TSS	Primary B cells from cord blood	blood
36	chr8:124934000-124935000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
37	chr8:124934000-124935000	Enhancers	Fetal Thymus	thymus
38	chr8:124934000-124935000	Enhancers	Spleen	Spleen
39	chr8:124934000-124935000	Enhancers	HSMMtube	muscle
40	chr8:124934000-124935000	Enhancers	NH-A	brain
41	chr8:124934000-124935200	Enhancers	Primary B cells from peripheral blood	blood
42	chr8:124934000-124935200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr8:124934000-124935200	Enhancers	Fetal Heart	heart
44	chr8:124934000-124935200	Flanking Active TSS	K562	blood
45	chr8:124934000-124935200	Enhancers	NHDF-Ad	bronchial
46	chr8:124934000-124935200	Enhancers	NHLF	lung
47	chr8:124934000-124935400	Enhancers	HSMM	muscle
48	chr8:124934200-124934400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr8:124934200-124934400	Enhancers	Primary T helper cells fromperipheralblood	blood
50	chr8:124934200-124934400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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