Variant report

Variant	rs7826317
Chromosome Location	chr8:119461196-119461197
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs16891024	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16891032	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16891035	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16891037	0.81[YRI][hapmap]
rs16891039	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16891041	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16891048	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16891050	1.00[ASW][hapmap];0.94[MKK][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16891059	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16891066	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17749504	1.00[CHD][hapmap]
rs4289848	1.00[AMR][1000 genomes]
rs58709896	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59462130	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60267888	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60852015	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61139842	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61421166	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6983077	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6983349	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6989886	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6990311	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6990359	1.00[AMR][1000 genomes]
rs6994553	1.00[AMR][1000 genomes]
rs6994733	1.00[AMR][1000 genomes]
rs6996394	1.00[AMR][1000 genomes]
rs7826591	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7831301	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7831314	1.00[ASW][hapmap];1.00[LWK][hapmap];0.84[MKK][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7831381	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7831534	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7838011	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7838136	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7838410	1.00[CHD][hapmap]
rs7838543	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv612047	chr8:118939094-119468609	Flanking Active TSS Enhancers Genic enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1032681	chr8:119153316-119609948	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv539737	chr8:119153316-119609948	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv831443	chr8:119390590-119590662	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119449200-119475400	Weak transcription	Gastric	stomach
2	chr8:119453200-119462400	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr8:119456400-119462200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr8:119457400-119462200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr8:119457400-119462200	Weak transcription	Fetal Heart	heart
6	chr8:119457600-119461400	Weak transcription	Hela-S3	cervix

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