Variant report

Variant	rs7827015
Chromosome Location	chr8:61836971-61836972
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:61835952..61838593-chr8:61841536..61843319,2	K562	blood:
2	chr8:61836839..61839407-chr8:61851968..61854630,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000255397	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10808715	0.91[ASN][1000 genomes]
rs13257990	0.91[ASN][1000 genomes]
rs16926586	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34434045	0.88[ASN][1000 genomes]
rs4644237	0.80[ASN][1000 genomes]
rs56764036	0.96[ASN][1000 genomes]
rs58023506	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs62525903	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62525904	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62525905	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62525907	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs62525909	0.89[ASN][1000 genomes]
rs7821046	0.89[ASN][1000 genomes]
rs7838737	0.91[ASN][1000 genomes]
rs7839575	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917756	chr8:60942299-61862796	Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv526196	chr8:61593569-61877623	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	esv1795586	chr8:61733174-61863906	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv429919	chr8:61771472-61979873	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
5	nsv890947	chr8:61815886-61882751	Active TSS Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv948922	chr8:61818964-62475097	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:61832400-61838800	Weak transcription	HSMMtube	muscle
2	chr8:61833600-61839200	Enhancers	Primary T cells from cord blood	blood
3	chr8:61834800-61837000	Enhancers	Brain Cingulate Gyrus	brain
4	chr8:61834800-61839200	Enhancers	Primary T cells fromperipheralblood	blood
5	chr8:61835200-61839400	Enhancers	Primary B cells from cord blood	blood
6	chr8:61835200-61839400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr8:61835400-61837800	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr8:61835400-61838600	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr8:61835400-61838600	Enhancers	GM12878-XiMat	blood
10	chr8:61835400-61838800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr8:61835400-61838800	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr8:61835400-61839400	Enhancers	Thymus	Thymus
13	chr8:61835400-61842600	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr8:61835400-61843000	Enhancers	Primary hematopoietic stem cells	blood
15	chr8:61835600-61837200	Enhancers	Pancreas	Pancrea
16	chr8:61835600-61839000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr8:61835800-61837000	Bivalent Enhancer	Brain Germinal Matrix	brain
18	chr8:61835800-61837000	Bivalent Enhancer	Fetal Muscle Leg	muscle
19	chr8:61835800-61837200	Enhancers	Sigmoid Colon	Sigmoid Colon
20	chr8:61835800-61838800	Enhancers	Primary T killer memory cells from peripheral blood	blood
21	chr8:61835800-61839400	Enhancers	Primary B cells from peripheral blood	blood
22	chr8:61835800-61839400	Enhancers	Fetal Thymus	thymus
23	chr8:61835800-61840800	Enhancers	Brain Hippocampus Middle	brain
24	chr8:61836000-61837000	Enhancers	Breast Myoepithelial Primary Cells	Breast
25	chr8:61836000-61837200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
26	chr8:61836000-61837200	Enhancers	Brain Substantia Nigra	brain
27	chr8:61836000-61838600	Enhancers	Primary T helper naive cells from peripheral blood	blood
28	chr8:61836000-61838600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
29	chr8:61836000-61839800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
30	chr8:61836000-61839800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
31	chr8:61836200-61837200	Enhancers	Brain Anterior Caudate	brain
32	chr8:61836200-61837200	Enhancers	Duodenum Mucosa	Duodenum
33	chr8:61836200-61838800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
34	chr8:61836200-61839400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr8:61836200-61839800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
36	chr8:61836400-61837000	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
37	chr8:61836400-61837000	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
38	chr8:61836400-61837000	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr8:61836400-61837000	Enhancers	Colonic Mucosa	Colon
40	chr8:61836400-61837000	Enhancers	Gastric	stomach
41	chr8:61836400-61837200	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
42	chr8:61836400-61837200	Enhancers	Rectal Smooth Muscle	rectum
43	chr8:61836400-61837400	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
44	chr8:61836400-61838600	Weak transcription	Right Atrium	heart
45	chr8:61836400-61839000	Enhancers	Primary neutrophils fromperipheralblood	blood
46	chr8:61836600-61837000	Bivalent Enhancer	Placenta	Placenta
47	chr8:61836600-61837200	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
48	chr8:61836600-61837200	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
49	chr8:61836600-61837200	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
50	chr8:61836600-61837200	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell

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