Variant report

Variant	rs7827359
Chromosome Location	chr8:4920130-4920131
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:4919838..4920394-chr8:5997449..5998189,2	K562	blood:
2	chr8:4919600..4920385-chr8:6687720..6688260,2	K562	blood:
3	chr8:4919533..4920406-chr8:5997153..5998101,2	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs56137369	1.00[EUR][1000 genomes]
rs56354951	1.00[EUR][1000 genomes]
rs56360920	1.00[EUR][1000 genomes]
rs57263244	1.00[EUR][1000 genomes]
rs58363384	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59463437	1.00[EUR][1000 genomes]
rs59642053	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60245174	1.00[EUR][1000 genomes]
rs61317727	1.00[EUR][1000 genomes]
rs73509448	1.00[EUR][1000 genomes]
rs73659704	1.00[EUR][1000 genomes]
rs73659706	1.00[EUR][1000 genomes]
rs73659743	1.00[EUR][1000 genomes]
rs73661823	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73661838	1.00[EUR][1000 genomes]
rs73661839	1.00[EUR][1000 genomes]
rs73661842	1.00[EUR][1000 genomes]
rs73661854	1.00[EUR][1000 genomes]
rs73661855	1.00[EUR][1000 genomes]
rs73661873	1.00[EUR][1000 genomes]
rs73661885	1.00[EUR][1000 genomes]
rs73661886	1.00[EUR][1000 genomes]
rs73661894	1.00[EUR][1000 genomes]
rs73661897	1.00[EUR][1000 genomes]
rs73661898	1.00[EUR][1000 genomes]
rs73661900	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv609876	chr8:4494811-5092970	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1029480	chr8:4497596-5081032	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv498130	chr8:4532988-5176376	Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1031026	chr8:4771072-5054326	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv889978	chr8:4853197-5460166	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv1032611	chr8:4887741-4957559	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv539405	chr8:4887741-4957559	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv1028846	chr8:4907673-5128665	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv465402	chr8:4909163-4961837	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv609900	chr8:4909163-4961837	Active TSS Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv889979	chr8:4915575-4944714	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	esv3421475	chr8:4917297-4921632	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:4918200-4920200	Weak transcription	Brain Hippocampus Middle	brain
2	chr8:4920000-4920200	Enhancers	Brain Anterior Caudate	brain
3	chr8:4920000-4920600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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