Variant report

Variant	rs7827574
Chromosome Location	chr8:125260516-125260517
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:125260051..125262572-chr8:125383309..125386031,3	MCF-7	breast:
2	chr8:125258129..125260887-chr8:125283574..125285765,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000253227	Chromatin interaction
ENSG00000164983	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs56306432	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762769	chr8:125167256-125480574	Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125250400-125267600	Weak transcription	Fetal Heart	heart
2	chr8:125258400-125282800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr8:125258800-125260600	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr8:125259200-125260800	Enhancers	Primary B cells from peripheral blood	blood
5	chr8:125259600-125273800	Weak transcription	Left Ventricle	heart
6	chr8:125259800-125261800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr8:125259800-125263800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr8:125259800-125263800	Weak transcription	Fetal Thymus	thymus
9	chr8:125259800-125263800	Weak transcription	Spleen	Spleen
10	chr8:125259800-125265400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr8:125260000-125261200	Enhancers	Primary hematopoietic stem cells	blood
12	chr8:125260000-125262000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr8:125260000-125263800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr8:125260000-125268400	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr8:125260000-125269400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr8:125260200-125260600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr8:125260200-125260600	Enhancers	Monocytes-CD14+_RO01746	blood
18	chr8:125260200-125263400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr8:125260200-125263600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr8:125260200-125263600	Weak transcription	HUVEC	blood vessel
21	chr8:125260200-125263800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr8:125260200-125263800	Weak transcription	Adipose Nuclei	Adipose
23	chr8:125260200-125266200	Weak transcription	NHDF-Ad	bronchial
24	chr8:125260200-125266600	Weak transcription	A549	lung
25	chr8:125260400-125260800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr8:125260400-125260800	Weak transcription	GM12878-XiMat	blood
27	chr8:125260400-125265400	Weak transcription	Hela-S3	cervix

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links