Variant report

Variant	rs7827614
Chromosome Location	chr8:127680060-127680061
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:17)
CpG islands
(count:0)
Chromatin interactive
region (count:1)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:17 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MXI1	chr8:127679920-127680096	H1-hESC	embryonic stem cell:	n/a	n/a
2	ZNF143	chr8:127679910-127680109	GM12878	blood:	n/a	n/a
3	CTCF	chr8:127679920-127680070	HCT-116	colon:	n/a	n/a
4	ZNF143	chr8:127679825-127680151	K562	blood:	n/a	n/a
5	CTCF	chr8:127679920-127680070	RPTEC	kidney:	n/a	n/a
6	ZNF143	chr8:127679813-127680170	H1-hESC	embryonic stem cell:	n/a	n/a
7	CTCF	chr8:127679940-127680090	MCF-7	breast:	n/a	n/a
8	CTCF	chr8:127679920-127680070	HEEpiC	esophagus:	n/a	n/a
9	JUND	chr8:127680020-127680210	H1-hESC	embryonic stem cell:	n/a	chr8:127680182-127680191
10	CTCF	chr8:127679920-127680070	GM12864	blood:	n/a	n/a
11	CTCF	chr8:127679960-127680110	GM12875	blood:	n/a	n/a
12	CTCF	chr8:127679920-127680070	GM12873	blood:	n/a	n/a
13	CTCF	chr8:127679960-127680110	A549	lung:	n/a	n/a
14	CTCF	chr8:127679940-127680090	HMF	breast:	n/a	n/a
15	CTCF	chr8:127679960-127680110	HRE	kidney:	n/a	n/a
16	CTCF	chr8:127679920-127680070	HEK293	kidney:	n/a	n/a
17	CTCF	chr8:127679940-127680090	GM12868	blood:	n/a	n/a

No data

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:127678496..127681141-chr8:127700140..127703020,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10113420	0.86[EUR][1000 genomes]
rs11782631	0.88[EUR][1000 genomes]
rs12335273	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13280151	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28478885	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28669058	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34512701	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4416795	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7813757	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7814010	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917354	chr8:127545903-127728374	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv891438	chr8:127670339-127845702	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:127613200-127686800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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