Variant report

Variant	rs7828292
Chromosome Location	chr8:118370476-118370477
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1499420	0.90[ASN][1000 genomes]
rs1613047	0.92[ASN][1000 genomes]
rs1793744	0.83[ASN][1000 genomes]
rs2853187	0.90[ASN][1000 genomes]
rs4876373	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530386	chr8:117509968-118391406	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv1027039	chr8:118143762-118460954	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv831435	chr8:118266417-118466651	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:118369000-118371000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr8:118369200-118371000	Enhancers	H9 Cell Line	embryonic stem cell
3	chr8:118369200-118371200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr8:118369200-118371400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr8:118369200-118373000	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr8:118369400-118371200	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr8:118369400-118372200	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr8:118369600-118371400	Enhancers	H1 Cell Line	embryonic stem cell
9	chr8:118369600-118371400	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr8:118369800-118370600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr8:118369800-118370800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr8:118369800-118371200	Enhancers	Fetal Brain Male	brain
13	chr8:118370200-118370600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
14	chr8:118370200-118371000	Enhancers	Brain Germinal Matrix	brain
15	chr8:118370200-118371400	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr8:118370400-118371200	Enhancers	Fetal Muscle Leg	muscle
17	chr8:118370400-118371400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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