Variant report

Variant	rs7828816
Chromosome Location	chr8:69062534-69062535
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs2380447	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35746610	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4471021	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7825160	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3331644	chr8:68806705-69189171	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1028889	chr8:69026806-69308725	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv948687	chr8:69041121-69642540	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69007400-69066200	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr8:69016800-69062600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr8:69020000-69082600	Weak transcription	Fetal Stomach	stomach
4	chr8:69021000-69067600	Weak transcription	Right Ventricle	heart
5	chr8:69033200-69066800	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr8:69035200-69064600	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr8:69037400-69064800	Weak transcription	Left Ventricle	heart
8	chr8:69041000-69068400	Weak transcription	Lung	lung
9	chr8:69043600-69107000	Weak transcription	Brain Substantia Nigra	brain
10	chr8:69045400-69066800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr8:69045600-69066200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr8:69046600-69083200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr8:69046800-69070800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr8:69047000-69070000	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr8:69047800-69066200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr8:69050000-69065200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr8:69052600-69104600	Weak transcription	Brain Hippocampus Middle	brain
18	chr8:69055800-69070800	Weak transcription	Primary hematopoietic stem cells	blood
19	chr8:69059400-69066200	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr8:69059400-69066400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr8:69059800-69064000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr8:69061200-69063600	Enhancers	Muscle Satellite Cultured Cells	--
23	chr8:69061200-69063800	Weak transcription	Fetal Muscle Trunk	muscle
24	chr8:69061400-69063400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr8:69061600-69062600	Weak transcription	Stomach Smooth Muscle	stomach
26	chr8:69061800-69062800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr8:69061800-69074000	Weak transcription	Adipose Nuclei	Adipose
28	chr8:69062000-69063400	Enhancers	HUVEC	blood vessel
29	chr8:69062200-69063200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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