Variant report

Variant	rs7829365
Chromosome Location	chr8:2104494-2104495
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10100112	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10216450	1.00[AMR][1000 genomes]
rs10216452	1.00[AMR][1000 genomes]
rs17064786	1.00[AMR][1000 genomes]
rs17064839	1.00[AMR][1000 genomes]
rs17064842	1.00[AMR][1000 genomes]
rs28402711	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28478201	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28490407	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28525329	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28668728	1.00[AMR][1000 genomes]
rs34620424	1.00[AMR][1000 genomes]
rs62500423	1.00[AMR][1000 genomes]
rs7829100	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7831244	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7838865	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9987137	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889712	chr8:1591412-2337777	Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:2076000-2109600	Weak transcription	Right Atrium	heart
2	chr8:2093000-2107200	Weak transcription	Gastric	stomach
3	chr8:2094000-2122400	Weak transcription	Right Ventricle	heart
4	chr8:2101000-2118000	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr8:2103200-2104600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
6	chr8:2103400-2104600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
7	chr8:2103600-2104600	Enhancers	Primary T cells from cord blood	blood
8	chr8:2103600-2104600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr8:2103600-2104600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr8:2103600-2104600	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr8:2103600-2105200	Enhancers	Primary T cells fromperipheralblood	blood
12	chr8:2103600-2105200	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr8:2103600-2109600	Weak transcription	Left Ventricle	heart
14	chr8:2103800-2104600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
15	chr8:2103800-2104600	Enhancers	Fetal Thymus	thymus
16	chr8:2103800-2104800	Enhancers	Primary T helper cells fromperipheralblood	blood
17	chr8:2104000-2104600	Active TSS	iPS-20b Cell Line	embryonic stem cell
18	chr8:2104000-2104800	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
19	chr8:2104200-2104600	Active TSS	ES-I3 Cell Line	embryonic stem cell
20	chr8:2104200-2104600	Active TSS	H1 Cell Line	embryonic stem cell
21	chr8:2104200-2104600	Active TSS	H9 Cell Line	embryonic stem cell
22	chr8:2104200-2104600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr8:2104200-2104600	Active TSS	HUES6 Cell Line	embryonic stem cell
24	chr8:2104200-2104600	Active TSS	HUES64 Cell Line	embryonic stem cell
25	chr8:2104200-2104600	Active TSS	iPS-15b Cell Line	embryonic stem cell
26	chr8:2104200-2104600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
27	chr8:2104200-2104600	Active TSS	Spleen	Spleen
28	chr8:2104200-2104800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr8:2104200-2104800	Enhancers	Primary monocytes fromperipheralblood	blood
30	chr8:2104400-2104600	Active TSS	HUES48 Cell Line	embryonic stem cell
31	chr8:2104400-2104600	Active TSS	iPS-18 Cell Line	embryonic stem cell
32	chr8:2104400-2104600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
33	chr8:2104400-2105400	Active TSS	Pancreas	Pancrea
34	chr8:2104400-2110200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr8:2104400-2110400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

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