Variant report

Variant	rs7829817
Chromosome Location	chr8:87051321-87051322
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:86990914..86993780-chr8:87050538..87053363,2	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10088417	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10089236	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10090327	0.81[CHD][hapmap];0.82[ASN][1000 genomes]
rs10955649	0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs11787296	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12542326	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12550706	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13254379	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13281353	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13281369	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4961042	0.84[CEU][hapmap];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758162	chr8:86405478-87055053	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	esv2759624	chr8:86405478-87055053	Enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv428204	chr8:86405478-87312208	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
4	nsv529563	chr8:86467090-87381984	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
5	nsv1028959	chr8:86835367-87142383	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv891146	chr8:86841229-87083747	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
7	nsv932023	chr8:86845979-87490694	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
8	nsv891147	chr8:86886950-87333968	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
9	nsv1034721	chr8:86977250-87131151	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
10	nsv891148	chr8:86987886-87149808	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
11	nsv891149	chr8:87023306-87167184	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
12	nsv1034855	chr8:87040075-87168730	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:87046000-87051400	Weak transcription	HSMM	muscle
2	chr8:87046200-87051400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr8:87047000-87051400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr8:87048200-87051400	Weak transcription	HSMMtube	muscle
5	chr8:87048800-87057400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr8:87049000-87051600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr8:87049200-87051400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr8:87049200-87051400	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr8:87049200-87051400	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr8:87049200-87051400	Weak transcription	NHEK	skin
11	chr8:87049200-87051600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr8:87049200-87051600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr8:87049200-87051600	Weak transcription	NH-A	brain
14	chr8:87049200-87051800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr8:87049400-87051400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr8:87049400-87051400	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr8:87049600-87051400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr8:87051000-87051400	Enhancers	Fetal Muscle Leg	muscle
19	chr8:87051000-87051600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
20	chr8:87051000-87051800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr8:87051200-87051400	Enhancers	Liver	Liver
22	chr8:87051200-87051400	Flanking Active TSS	Brain Cingulate Gyrus	brain
23	chr8:87051200-87051400	Flanking Active TSS	Brain Hippocampus Middle	brain
24	chr8:87051200-87051400	Enhancers	Fetal Lung	lung
25	chr8:87051200-87051400	Active TSS	Skeletal Muscle Female	skeletal muscle
26	chr8:87051200-87051400	Enhancers	HMEC	breast
27	chr8:87051200-87051400	Active TSS	Osteobl	bone
28	chr8:87051200-87051600	Flanking Active TSS	Brain Substantia Nigra	brain
29	chr8:87051200-87051600	Flanking Active TSS	Colon Smooth Muscle	Colon
30	chr8:87051200-87051800	Flanking Active TSS	Adipose Nuclei	Adipose
31	chr8:87051200-87052000	Active TSS	Stomach Smooth Muscle	stomach
32	chr8:87051200-87052200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr8:87051200-87052200	Active TSS	Brain Angular Gyrus	brain
34	chr8:87051200-87052200	Active TSS	Brain Anterior Caudate	brain
35	chr8:87051200-87052200	Active TSS	Brain Inferior Temporal Lobe	brain
36	chr8:87051200-87052400	Active TSS	Breast Myoepithelial Primary Cells	Breast
37	chr8:87051200-87052400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
38	chr8:87051200-87052400	Active TSS	Psoas Muscle	Psoas

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links