Variant report

Variant	rs7831339
Chromosome Location	chr8:49059096-49059097
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs55826459	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs55862465	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56306710	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7005646	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7844827	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931032	chr8:48744329-49091359	Strong transcription Flanking Active TSS Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49051800-49065800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:49054000-49059200	Weak transcription	Adipose Nuclei	Adipose
3	chr8:49054000-49059200	Weak transcription	HMEC	breast
4	chr8:49054400-49059200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr8:49054400-49059200	Weak transcription	Fetal Lung	lung
6	chr8:49054400-49059200	Weak transcription	NHEK	skin
7	chr8:49054800-49059200	Weak transcription	NHDF-Ad	bronchial
8	chr8:49054800-49059200	Weak transcription	Osteobl	bone
9	chr8:49054800-49059400	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr8:49056200-49066000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr8:49058000-49064800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr8:49058200-49059200	Weak transcription	Esophagus	oesophagus
13	chr8:49058200-49059800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr8:49058200-49060800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr8:49058600-49060000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr8:49058600-49060600	Enhancers	Fetal Muscle Leg	muscle
17	chr8:49058600-49060800	Enhancers	Fetal Muscle Trunk	muscle
18	chr8:49058800-49060600	Enhancers	Fetal Stomach	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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