Variant report

Variant	rs7832049
Chromosome Location	chr8:52705469-52705470
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10113123	1.00[EUR][1000 genomes]
rs10504129	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11987250	1.00[EUR][1000 genomes]
rs11988429	1.00[EUR][1000 genomes]
rs11990522	1.00[EUR][1000 genomes]
rs11990974	1.00[EUR][1000 genomes]
rs11994304	1.00[EUR][1000 genomes]
rs11995501	1.00[EUR][1000 genomes]
rs11997646	1.00[EUR][1000 genomes]
rs12549663	1.00[EUR][1000 genomes]
rs12675655	1.00[EUR][1000 genomes]
rs12679326	1.00[EUR][1000 genomes]
rs4373509	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4573264	1.00[EUR][1000 genomes]
rs58605516	1.00[EUR][1000 genomes]
rs59153374	1.00[EUR][1000 genomes]
rs59373752	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6473639	1.00[EUR][1000 genomes]
rs6473640	1.00[EUR][1000 genomes]
rs6990860	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7000576	1.00[EUR][1000 genomes]
rs7012129	1.00[EUR][1000 genomes]
rs7015699	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73574281	1.00[EUR][1000 genomes]
rs73574290	1.00[EUR][1000 genomes]
rs73574293	1.00[EUR][1000 genomes]
rs73576204	1.00[EUR][1000 genomes]
rs73576207	1.00[EUR][1000 genomes]
rs73576208	1.00[EUR][1000 genomes]
rs73580258	1.00[EUR][1000 genomes]
rs73580281	1.00[EUR][1000 genomes]
rs73580289	1.00[EUR][1000 genomes]
rs73580296	1.00[EUR][1000 genomes]
rs73580301	1.00[EUR][1000 genomes]
rs73590408	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73592217	1.00[EUR][1000 genomes]
rs73592223	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73592239	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7816154	1.00[EUR][1000 genomes]
rs7831461	1.00[EUR][1000 genomes]
rs7834322	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7838681	1.00[EUR][1000 genomes]
rs9643786	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932026	chr8:51858658-52758574	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv817615	chr8:52252405-53023384	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv1018429	chr8:52411443-52878946	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv1034856	chr8:52411443-52886765	Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv831316	chr8:52660353-52842928	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
6	nsv1023825	chr8:52668824-52716137	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:52703400-52705600	Weak transcription	Right Ventricle	heart
2	chr8:52704200-52712600	Weak transcription	Left Ventricle	heart
3	chr8:52704800-52705800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr8:52705000-52705800	ZNF genes & repeats	Spleen	Spleen
5	chr8:52705400-52705800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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