Variant report

Variant	rs7832092
Chromosome Location	chr8:19600739-19600740
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:19600708..19602865-chr8:19613352..19615544,2	MCF-7	breast:
2	chr17:57916703..57919051-chr8:19600694..19603305,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000147408	Chromatin interaction
ENSG00000199004	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11986293	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11989937	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11993795	0.83[AMR][1000 genomes]
rs17091547	1.00[MEX][hapmap]
rs28570547	0.83[AMR][1000 genomes]
rs28594358	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57669168	0.83[AMR][1000 genomes]
rs61477227	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949636	chr8:18957705-19664732	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv948861	chr8:19199688-19609029	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv949304	chr8:19199688-19625912	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv890625	chr8:19368697-19799641	Strong transcription Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	nsv1021575	chr8:19430653-19623452	Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv1021731	chr8:19515149-19643313	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv610759	chr8:19561997-20068842	Enhancers Strong transcription Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:19587400-19602800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr8:19587600-19600800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr8:19588600-19613400	Weak transcription	Pancreas	Pancrea
4	chr8:19591800-19602800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr8:19592200-19603000	Weak transcription	Hela-S3	cervix
6	chr8:19597800-19603000	Weak transcription	Primary B cells from cord blood	blood
7	chr8:19597800-19603400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr8:19598000-19602400	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr8:19598000-19602400	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr8:19598000-19603200	Weak transcription	Left Ventricle	heart
11	chr8:19598600-19603000	Weak transcription	A549	lung
12	chr8:19598800-19601000	Weak transcription	Primary T cells from cord blood	blood
13	chr8:19599400-19601000	Enhancers	Fetal Heart	heart
14	chr8:19600000-19601000	Enhancers	Fetal Lung	lung
15	chr8:19600200-19600800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr8:19600200-19601000	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr8:19600200-19601000	Enhancers	Fetal Brain Male	brain
18	chr8:19600200-19602000	Enhancers	Fetal Brain Female	brain
19	chr8:19600400-19600800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
20	chr8:19600400-19601000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
21	chr8:19600400-19603200	Weak transcription	Aorta	Aorta
22	chr8:19600600-19600800	Enhancers	Brain Hippocampus Middle	brain
23	chr8:19600600-19601800	Weak transcription	Primary T helper cells PMA-I stimulated	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links