Variant report

Variant	rs78321104
Chromosome Location	chr6:146212595-146212596
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:146204410..146206507-chr6:146211730..146213654,2	MCF-7	breast:
2	chr6:146133506..146135427-chr6:146211550..146213483,2	K562	blood:
3	chr6:146134558..146137380-chr6:146209564..146213180,4	MCF-7	breast:
4	chr6:146209846..146213898-chr6:146246538..146250051,3	K562	blood:
5	chr6:146208202..146210645-chr6:146210859..146213066,4	K562	blood:

Variant related genes	Relation type
ENSG00000235652	Chromatin interaction
ENSG00000146414	Chromatin interaction
ENSG00000118496	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034226	chr6:146071068-146306942	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv830835	chr6:146145148-146287473	Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv437525	chr6:146212285-146230454	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146186400-146213200	Weak transcription	Brain Anterior Caudate	brain
2	chr6:146188000-146218800	Weak transcription	Right Ventricle	heart
3	chr6:146189400-146214400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr6:146196600-146219600	Weak transcription	HMEC	breast
5	chr6:146197800-146219600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr6:146198200-146218600	Weak transcription	Fetal Heart	heart
7	chr6:146198200-146225600	Weak transcription	HSMMtube	muscle
8	chr6:146199800-146214400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr6:146200000-146214200	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr6:146200400-146228600	Weak transcription	Pancreas	Pancrea
11	chr6:146200800-146213400	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr6:146201200-146217400	Strong transcription	HUES64 Cell Line	embryonic stem cell
13	chr6:146201200-146225600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr6:146201200-146230400	Weak transcription	NHEK	skin
15	chr6:146201800-146219600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr6:146202800-146213800	Weak transcription	GM12878-XiMat	blood
17	chr6:146202800-146220000	Weak transcription	Thymus	Thymus
18	chr6:146203200-146219600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr6:146203400-146218600	Weak transcription	A549	lung
20	chr6:146204600-146214400	Weak transcription	Hela-S3	cervix
21	chr6:146204800-146224800	Weak transcription	Rectal Smooth Muscle	rectum
22	chr6:146205400-146214800	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr6:146206600-146215400	Strong transcription	Adipose Nuclei	Adipose
24	chr6:146206800-146219600	Weak transcription	Fetal Intestine Small	intestine
25	chr6:146207400-146217600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr6:146207800-146213600	Strong transcription	Primary T cells from cord blood	blood
27	chr6:146207800-146240200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr6:146208000-146219000	Weak transcription	Small Intestine	intestine
29	chr6:146208200-146213200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
30	chr6:146208200-146215400	Strong transcription	Primary T helper cells fromperipheralblood	blood
31	chr6:146208400-146215000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
32	chr6:146208400-146216800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr6:146208400-146218000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr6:146208400-146218800	Weak transcription	Colon Smooth Muscle	Colon
35	chr6:146208800-146213200	Strong transcription	Fetal Lung	lung
36	chr6:146208800-146215400	Strong transcription	Fetal Thymus	thymus
37	chr6:146208800-146230000	Weak transcription	Colonic Mucosa	Colon
38	chr6:146209000-146212800	Strong transcription	Duodenum Mucosa	Duodenum
39	chr6:146209000-146214800	Strong transcription	K562	blood
40	chr6:146209000-146216800	Strong transcription	Dnd41	blood
41	chr6:146209200-146215200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr6:146209400-146215000	Strong transcription	Primary B cells from cord blood	blood
43	chr6:146209400-146215200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
44	chr6:146209600-146215000	Strong transcription	Left Ventricle	heart
45	chr6:146209600-146215000	Strong transcription	Skeletal Muscle Female	skeletal muscle
46	chr6:146209800-146219000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
47	chr6:146210000-146212600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr6:146210200-146213400	Weak transcription	Fetal Intestine Large	intestine
49	chr6:146210200-146219800	Weak transcription	Gastric	stomach
50	chr6:146210200-146231000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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