Variant report

Variant	rs7832200
Chromosome Location	chr8:52735677-52735678
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs16916878	0.91[YRI][hapmap];0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932026	chr8:51858658-52758574	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv817615	chr8:52252405-53023384	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv1018429	chr8:52411443-52878946	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv1034856	chr8:52411443-52886765	Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv831316	chr8:52660353-52842928	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:52717600-52741800	Weak transcription	Aorta	Aorta
2	chr8:52719400-52741800	Weak transcription	Esophagus	oesophagus
3	chr8:52720800-52737000	Weak transcription	Brain Anterior Caudate	brain
4	chr8:52721000-52741000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr8:52722000-52771400	Weak transcription	Gastric	stomach
6	chr8:52722200-52752000	Weak transcription	Pancreas	Pancrea
7	chr8:52722400-52741800	Weak transcription	Right Ventricle	heart
8	chr8:52722800-52741000	Weak transcription	Colon Smooth Muscle	Colon
9	chr8:52722800-52741800	Weak transcription	HSMMtube	muscle
10	chr8:52723000-52741600	Weak transcription	Fetal Heart	heart
11	chr8:52726000-52741800	Weak transcription	Brain Substantia Nigra	brain
12	chr8:52727600-52756800	Weak transcription	Brain Angular Gyrus	brain
13	chr8:52728200-52759200	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr8:52729800-52741600	Weak transcription	Brain Hippocampus Middle	brain
15	chr8:52731200-52763400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr8:52731200-52771000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr8:52731400-52753400	Weak transcription	NHDF-Ad	bronchial
18	chr8:52731800-52741800	Weak transcription	Psoas Muscle	Psoas
19	chr8:52731800-52745600	Weak transcription	NHEK	skin
20	chr8:52732200-52743600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr8:52732200-52746000	Weak transcription	Fetal Brain Male	brain
22	chr8:52732200-52746400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr8:52732800-52735800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr8:52732800-52753600	Weak transcription	Osteobl	bone
25	chr8:52733000-52736000	Strong transcription	Primary monocytes fromperipheralblood	blood
26	chr8:52733000-52736000	Strong transcription	Primary neutrophils fromperipheralblood	blood
27	chr8:52733000-52736000	Strong transcription	Primary B cells from peripheral blood	blood
28	chr8:52733000-52736000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr8:52733000-52736000	Strong transcription	Fetal Intestine Large	intestine
30	chr8:52733000-52736200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr8:52733000-52736200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr8:52733200-52735800	Strong transcription	HUES64 Cell Line	embryonic stem cell
33	chr8:52733200-52735800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr8:52733200-52735800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr8:52733200-52735800	Strong transcription	Primary T cells from cord blood	blood
36	chr8:52733200-52736000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr8:52733200-52736000	Strong transcription	Fetal Muscle Leg	muscle
38	chr8:52733200-52741000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
39	chr8:52733200-52742600	Weak transcription	HepG2	liver
40	chr8:52733200-52758800	Weak transcription	Small Intestine	intestine
41	chr8:52733200-52763600	Weak transcription	Brain Cingulate Gyrus	brain
42	chr8:52733200-52783800	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr8:52733400-52735800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
44	chr8:52733400-52736000	Strong transcription	Liver	Liver
45	chr8:52733400-52736000	Strong transcription	Thymus	Thymus
46	chr8:52733400-52736200	Strong transcription	Fetal Thymus	thymus
47	chr8:52733400-52739800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr8:52733400-52741800	Weak transcription	Fetal Muscle Trunk	muscle
49	chr8:52733400-52757200	Weak transcription	Colonic Mucosa	Colon
50	chr8:52733600-52735800	Strong transcription	Primary hematopoietic stem cells	blood

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