Variant report

Variant	rs7833036
Chromosome Location	chr8:9472952-9472953
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10094343	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10104247	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11249930	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11784181	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12335065	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12542420	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12544673	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12549064	0.81[EUR][1000 genomes]
rs28437757	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28464158	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28610188	0.81[AFR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28615758	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4240630	0.81[EUR][1000 genomes]
rs4265191	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4416825	0.83[ASN][1000 genomes]
rs4427176	0.83[EUR][1000 genomes]
rs4457339	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4481595	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4560795	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4562329	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4573280	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4841178	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4841180	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4841184	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62491543	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62491544	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62493907	0.84[ASN][1000 genomes]
rs62493909	0.82[ASN][1000 genomes]
rs62493910	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62493913	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6601341	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6996829	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7464476	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7821799	0.83[EUR][1000 genomes]
rs7827278	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530864	chr8:9097498-9914548	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv497927	chr8:9097611-9544519	Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:9450600-9480200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr8:9461000-9486400	Weak transcription	Fetal Intestine Small	intestine
3	chr8:9462200-9473800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr8:9463000-9479800	Weak transcription	Dnd41	blood
5	chr8:9463200-9480600	Weak transcription	Primary T cells from cord blood	blood
6	chr8:9466200-9473000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr8:9466200-9480000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr8:9466200-9484400	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr8:9466400-9479800	Weak transcription	Primary B cells from peripheral blood	blood
10	chr8:9466400-9483200	Weak transcription	Liver	Liver
11	chr8:9466400-9484200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr8:9466400-9485400	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr8:9466400-9491000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr8:9468800-9473800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr8:9468800-9474600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr8:9468800-9476600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr8:9469000-9473800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr8:9469000-9476600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr8:9470200-9473800	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr8:9470400-9474600	Enhancers	Fetal Heart	heart
21	chr8:9470400-9475000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr8:9470600-9473000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr8:9470600-9473000	Enhancers	Brain Substantia Nigra	brain
24	chr8:9470600-9473200	Enhancers	Brain Angular Gyrus	brain
25	chr8:9470600-9473200	Enhancers	Brain Inferior Temporal Lobe	brain
26	chr8:9470600-9473800	Enhancers	Colon Smooth Muscle	Colon
27	chr8:9470600-9474600	Enhancers	Cortex derived primary cultured neurospheres	brain
28	chr8:9470800-9473200	Enhancers	Duodenum Smooth Muscle	Duodenum
29	chr8:9470800-9476200	Weak transcription	Placenta	Placenta
30	chr8:9470800-9476800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr8:9471000-9473200	Enhancers	Primary neutrophils fromperipheralblood	blood
32	chr8:9471000-9479800	Weak transcription	Primary T helper cells fromperipheralblood	blood
33	chr8:9471000-9487000	Weak transcription	HepG2	liver
34	chr8:9471200-9473600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr8:9471400-9473200	Enhancers	Breast Myoepithelial Primary Cells	Breast
36	chr8:9471600-9474000	Enhancers	Adipose Nuclei	Adipose
37	chr8:9471800-9473000	Enhancers	Sigmoid Colon	Sigmoid Colon
38	chr8:9471800-9473200	Enhancers	Fetal Stomach	stomach
39	chr8:9471800-9473200	Enhancers	NHDF-Ad	bronchial
40	chr8:9471800-9473400	Enhancers	GM12878-XiMat	blood
41	chr8:9471800-9475000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr8:9472000-9473000	Enhancers	Muscle Satellite Cultured Cells	--
43	chr8:9472000-9473000	Enhancers	Fetal Lung	lung
44	chr8:9472000-9473200	Enhancers	HUES6 Cell Line	embryonic stem cell
45	chr8:9472000-9474200	Weak transcription	HUVEC	blood vessel
46	chr8:9472000-9476200	Weak transcription	HMEC	breast
47	chr8:9472200-9473200	Enhancers	Fetal Muscle Leg	muscle
48	chr8:9472200-9473400	Enhancers	Ovary	ovary
49	chr8:9472200-9474600	Enhancers	Brain Cingulate Gyrus	brain
50	chr8:9472200-9475200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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