Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12675214	0.81[EUR][1000 genomes]
rs12675220	0.81[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs2953945	0.85[YRI][hapmap]
rs2953948	0.82[CEU][hapmap];0.85[YRI][hapmap]
rs2953950	0.82[CEU][hapmap];0.85[YRI][hapmap]
rs2953951	0.82[CEU][hapmap];0.85[YRI][hapmap]
rs2953955	0.83[YRI][hapmap]
rs2953957	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2958333	0.85[YRI][hapmap]
rs2958334	0.92[CEU][hapmap];0.85[YRI][hapmap];0.81[EUR][1000 genomes]
rs2978238	0.85[YRI][hapmap]
rs4374973	0.92[CEU][hapmap];0.83[TSI][hapmap];0.85[YRI][hapmap];0.83[AFR][1000 genomes]
rs4401840	0.92[CEU][hapmap];0.83[TSI][hapmap]
rs5022152	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs7016534	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7461173	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs7464182	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs7464209	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs7813466	0.81[EUR][1000 genomes]
rs7817788	0.92[CEU][hapmap];0.85[TSI][hapmap];0.85[YRI][hapmap];0.81[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs7833828	0.92[CEU][hapmap];0.85[TSI][hapmap];0.85[YRI][hapmap];0.81[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs7834286	0.83[EUR][1000 genomes]
rs7843991	0.81[EUR][1000 genomes]
rs7844031	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831349	chr8:69555461-69733515	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv465703	chr8:69641287-69814578	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv611462	chr8:69641287-69814578	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv890986	chr8:69647914-69704366	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1017131	chr8:69676989-69792515	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs7833861	EYA1	cis	cerebellum	SCAN
rs7833861	VCPIP1	cis	parietal	SCAN
rs7833861	ADHFE1	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69687800-69689400	Weak transcription	Fetal Lung	lung
2	chr8:69688400-69690400	Enhancers	Liver	Liver
3	chr8:69688600-69689400	Weak transcription	Fetal Stomach	stomach

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