Variant report
| Variant | rs7833929 |
|---|---|
| Chromosome Location | chr8:107040001-107040002 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs11991434 | 0.82[AMR][1000 genomes] |
| rs11997204 | 0.82[AMR][1000 genomes] |
| rs11998455 | 0.82[AMR][1000 genomes] |
| rs11998458 | 0.82[AMR][1000 genomes] |
| rs1603358 | 0.82[AMR][1000 genomes] |
| rs58777728 | 0.82[AMR][1000 genomes] |
| rs59553300 | 0.82[AMR][1000 genomes] |
| rs59667866 | 0.82[AMR][1000 genomes] |
| rs61186960 | 0.82[AMR][1000 genomes] |
| rs61476930 | 0.82[AMR][1000 genomes] |
| rs6983179 | 0.82[AMR][1000 genomes] |
| rs6999985 | 0.82[AMR][1000 genomes] |
| rs7005320 | 0.82[AMR][1000 genomes] |
| rs7012387 | 0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73295311 | 0.82[AMR][1000 genomes] |
| rs73295315 | 0.82[AMR][1000 genomes] |
| rs73295319 | 0.82[AMR][1000 genomes] |
| rs7816343 | 0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7826962 | 0.82[AMR][1000 genomes] |
| rs7830351 | 0.82[AMR][1000 genomes] |
| rs7830687 | 0.82[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7831070 | 0.82[AMR][1000 genomes] |
| rs7839192 | 0.82[AMR][1000 genomes] |
| rs7844249 | 0.82[AMR][1000 genomes] |
| rs7846344 | 0.82[AMR][1000 genomes] |
| rs924102 | 0.82[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1021369 | chr8:106493317-107243322 | Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 13 gene(s) | inside rSNPs | diseases |
| 2 | nsv611840 | chr8:106913294-107265915 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:107036400-107052000 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
