Variant report

Variant	rs7833955
Chromosome Location	chr8:104002664-104002665
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11988081	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs4305865	0.91[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6999781	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73699363	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73699364	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33118	chr8:103358567-104068172	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv611831	chr8:103995624-104002664	Weak transcription Enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103990400-104011400	Weak transcription	Placenta	Placenta
2	chr8:103993400-104012400	Weak transcription	Spleen	Spleen
3	chr8:103996400-104003200	Weak transcription	Primary hematopoietic stem cells	blood
4	chr8:103996400-104003200	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr8:103999000-104003800	Weak transcription	Gastric	stomach
6	chr8:104000000-104007000	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr8:104000200-104006800	Weak transcription	Fetal Muscle Leg	muscle
8	chr8:104001000-104007000	Weak transcription	Brain Hippocampus Middle	brain
9	chr8:104001400-104002800	Strong transcription	Primary B cells from cord blood	blood
10	chr8:104001600-104008800	Weak transcription	Brain Substantia Nigra	brain
11	chr8:104001600-104011400	Weak transcription	Fetal Brain Male	brain
12	chr8:104002600-104003000	Enhancers	Primary neutrophils fromperipheralblood	blood
13	chr8:104002600-104003000	Enhancers	Primary B cells from peripheral blood	blood
14	chr8:104002600-104003000	Enhancers	Primary hematopoietic stem cells short term culture	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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