Variant report

Variant	rs7833960
Chromosome Location	chr8:118931251-118931252
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:118929621..118931886-chr8:118940149..118942806,2	MCF-7	breast:
2	chr8:118931174..118933770-chr8:118938914..118940644,2	K562	blood:
3	chr8:118930438..118932126-chr8:119123387..119125000,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000182197	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10088632	1.00[EUR][1000 genomes]
rs13265594	1.00[EUR][1000 genomes]
rs17475323	1.00[EUR][1000 genomes]
rs17475337	1.00[EUR][1000 genomes]
rs17475344	1.00[EUR][1000 genomes]
rs17475351	1.00[EUR][1000 genomes]
rs17475358	1.00[EUR][1000 genomes]
rs17477476	1.00[EUR][1000 genomes]
rs17504170	1.00[EUR][1000 genomes]
rs17504205	1.00[EUR][1000 genomes]
rs17506336	1.00[EUR][1000 genomes]
rs2019967	1.00[EUR][1000 genomes]
rs28376539	1.00[EUR][1000 genomes]
rs28429320	1.00[EUR][1000 genomes]
rs28626687	1.00[EUR][1000 genomes]
rs3101578	1.00[EUR][1000 genomes]
rs3134313	1.00[EUR][1000 genomes]
rs4242577	1.00[EUR][1000 genomes]
rs4377987	1.00[EUR][1000 genomes]
rs59529135	1.00[EUR][1000 genomes]
rs60815148	1.00[EUR][1000 genomes]
rs6999867	1.00[EUR][1000 genomes]
rs73312336	1.00[EUR][1000 genomes]
rs73312339	1.00[EUR][1000 genomes]
rs7357537	1.00[EUR][1000 genomes]
rs73704827	1.00[EUR][1000 genomes]
rs73704828	1.00[EUR][1000 genomes]
rs73704829	1.00[EUR][1000 genomes]
rs73704830	1.00[EUR][1000 genomes]
rs73704831	1.00[EUR][1000 genomes]
rs7462118	1.00[EUR][1000 genomes]
rs9297572	1.00[EUR][1000 genomes]
rs9656804	1.00[EUR][1000 genomes]
rs9656924	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019636	chr8:118598433-118946091	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv539734	chr8:118598433-118946091	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv933516	chr8:118764605-119009093	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1030459	chr8:118840179-119155835	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv831440	chr8:118871930-119052269	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv891411	chr8:118891896-118942698	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1032355	chr8:118896733-119003223	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv465785	chr8:118901928-118970300	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv612046	chr8:118901928-118970300	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:118919200-118933200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr8:118922800-118932800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr8:118922800-118934800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr8:118923200-118933000	Weak transcription	Stomach Smooth Muscle	stomach
5	chr8:118923800-118933800	Weak transcription	Fetal Stomach	stomach
6	chr8:118924000-118932800	Weak transcription	Ovary	ovary
7	chr8:118924000-118933000	Weak transcription	Lung	lung
8	chr8:118926000-118931600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr8:118926000-118932800	Weak transcription	HSMMtube	muscle
10	chr8:118926400-118932200	Weak transcription	NHEK	skin
11	chr8:118926400-118932600	Weak transcription	HSMM	muscle
12	chr8:118926400-118932600	Weak transcription	NH-A	brain
13	chr8:118927000-118935000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr8:118927200-118932600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr8:118927400-118932800	Weak transcription	Liver	Liver
16	chr8:118928200-118932600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr8:118928600-118932800	Weak transcription	Duodenum Mucosa	Duodenum
18	chr8:118928800-118931800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr8:118928800-118932800	Weak transcription	A549	lung
20	chr8:118929000-118932800	Weak transcription	GM12878-XiMat	blood
21	chr8:118929000-118933000	Weak transcription	Fetal Intestine Large	intestine
22	chr8:118929800-118932000	Enhancers	NHDF-Ad	bronchial
23	chr8:118930000-118932000	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr8:118930200-118931400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr8:118930200-118932600	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr8:118930400-118932000	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr8:118930600-118931800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr8:118930600-118932000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr8:118930600-118932800	Enhancers	Osteobl	bone
30	chr8:118930800-118932600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr8:118930800-118932600	Weak transcription	Fetal Heart	heart
32	chr8:118930800-118932800	Weak transcription	Adipose Nuclei	Adipose
33	chr8:118930800-118933000	Weak transcription	Right Atrium	heart
34	chr8:118931000-118931800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr8:118931000-118932600	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr8:118931000-118932600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr8:118931000-118932600	Weak transcription	NHLF	lung
38	chr8:118931000-118932800	Weak transcription	H1 Cell Line	embryonic stem cell
39	chr8:118931000-118932800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
40	chr8:118931000-118932800	Weak transcription	Aorta	Aorta
41	chr8:118931000-118934400	Weak transcription	Psoas Muscle	Psoas
42	chr8:118931000-118935000	Weak transcription	Pancreas	Pancrea
43	chr8:118931200-118931600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr8:118931200-118931600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr8:118931200-118931800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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